ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-u.5	7491296	uncharacterized protein C57A7.06
ppo-r.4	7491296	uncharacterized protein C57A7.06
ppo-m.4	7491296	uncharacterized protein C57A7.06
ppo-u.5	7478845	uncharacterized protein C57A7.06
gma-u.5	100811431	U3 small nucleolar RNA-associated protein 14
gma-u.5	100784007	uncharacterized protein C57A7.06
mtr-u.5	112416091	uncharacterized protein C57A7.06
mtr-u.5	11423401	U3 small nucleolar RNA-associated protein 14
mtr-u.5	25499036	U3 small nucleolar RNA-associated protein 14
ath-u.5	AT4G02400	U3 ribonucleoprotein (Utp) family protein
ath-u.5	AT5G08600	U3 ribonucleoprotein (Utp) family protein
bra-r.6	103868214	U3 small nucleolar RNA-associated protein 14
bra-r.6	103836750	uncharacterized protein C57A7.06
vvi-u.5	100267476	uncharacterized LOC100267476
ghi-r.1	107946069	U3 small nucleolar RNA-associated protein 14
ghi-r.1	107931227	U3 small nucleolar RNA-associated protein 14
ghi-r.1	107943240	U3 small nucleolar RNA-associated protein 14 homolog A
bna-r.1	111200819	U3 small nucleolar RNA-associated protein 14 homolog A-like
bna-r.1	125586400	U3 small nucleolar RNA-associated protein 14-like
cit-r.1	102624815	uncharacterized LOC102624815
sly-u.5	101245392	uncharacterized LOC101245392
sot-r.1	102591880	uncharacterized protein C57A7.06
nta-r.1	107774979	uncharacterized LOC107774979
nta-r.1	107789212	uncharacterized LOC107789212
nta-r.1	107830027	uncharacterized LOC107830027
osa-u.5	4332800	U3 small nucleolar RNA-associated protein 14
zma-u.5	103634670	U3 small nucleolar RNA-associated protein 14
tae-r.2	123147891	uncharacterized protein C57A7.06
tae-r.2	123164685	U3 small nucleolar RNA-associated protein 14
tae-r.2	123156232	U3 small nucleolar RNA-associated protein 14
hvu-r.1	123413484	uncharacterized protein C57A7.06
sbi-r.1	8083648	U3 small nucleolar RNA-associated protein 14
bdi-r.1	100843592	uncharacterized protein C57A7.06
cre-r.1	CHLRE_11g478950v5	uncharacterized protein
cre-r.1	CHLRE_11g478966v5	uncharacterized protein

Top 50 coexpressed genes to 7491296 (ppo-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 7491296 (ppo-u.5 coexpression data)

CoexMap"7491296"

[Cytoscape]

Annotation

functional annotation

KEGG

pop03008 [list] [network] Ribosome biogenesis in eukaryotes (334 genes)

GO BP

GO:0006364 [list] [network] rRNA processing

(232 genes)

IEA

GO CC

GO:0032040 [list] [network] small-subunit processome	(53 genes)	IEA
GO:0005730 [list] [network] nucleolus	(220 genes)	IEA

GO MF

Protein

XP_002320338.3 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9

(predict for XP_002320338.3)

Subcellular
localization
TargetP

other 8, chlo 4

(predict for XP_002320338.3)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 7491296	ppo-r.4 for 7491296	ppo-m.4 for 7491296	ppo-u.5 for 7478845	gma-u.5 for 100811431	gma-u.5 for 100784007	mtr-u.5 for 112416091	mtr-u.5 for 11423401	mtr-u.5 for 25499036	ath-u.5 for AT4G02400	ath-u.5 for AT5G08600	bra-r.6 for 103868214	bra-r.6 for 103836750	vvi-u.5 for 100267476	ghi-r.1 for 107946069	ghi-r.1 for 107931227	ghi-r.1 for 107943240	bna-r.1 for 111200819	bna-r.1 for 125586400	cit-r.1 for 102624815	sly-u.5 for 101245392	sot-r.1 for 102591880	nta-r.1 for 107774979	nta-r.1 for 107789212	nta-r.1 for 107830027	osa-u.5 for 4332800	zma-u.5 for 103634670	tae-r.2 for 123147891	tae-r.2 for 123164685	tae-r.2 for 123156232	hvu-r.1 for 123413484	sbi-r.1 for 8083648	bdi-r.1 for 100843592	cre-r.1 for CHLRE_11g478950v5	cre-r.1 for CHLRE_11g478966v5

Ortholog

Ortholog ID: 5347

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized protein C57A7.06

U3 small nucleolar RNA-associated protein 14

uncharacterized protein C57A7.06

U3 small nucleolar RNA-associated protein 14

U3 small nucleolar RNA-associated protein 14 homolog A

U3 ribonucleoprotein (Utp) family protein

U3 small nucleolar RNA-associated protein 14

uncharacterized protein C57A7.06

uncharacterized LOC100267476

U3 small nucleolar RNA-associated protein 14

U3 small nucleolar RNA-associated protein 14 homolog A

U3 small nucleolar RNA-associated protein 14 homolog A-like

U3 small nucleolar RNA-associated protein 14-like

U3 small nucleolar RNA-associated protein 14

uncharacterized LOC102624815

uncharacterized LOC101245392

uncharacterized protein C57A7.06

uncharacterized LOC107774979

uncharacterized LOC107789212

uncharacterized LOC107830027

U3 small nucleolar RNA-associated protein 14

uncharacterized protein C57A7.06

U3 small nucleolar RNA-associated protein 14

uncharacterized protein C57A7.06

U3 small nucleolar RNA-associated protein 14

uncharacterized protein C57A7.06

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00970	Aminoacyl-tRNA biosynthesis	8
mtr03008	Ribosome biogenesis in eukaryotes	4
mtr00450	Selenocompound metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	9
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	3
cit03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	4
sot03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	5
nta03082	ATP-dependent chromatin remodeling	2
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	6
nta03013	Nucleocytoplasmic transport	5
nta03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	5
nta03082	ATP-dependent chromatin remodeling	5
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03008	Ribosome biogenesis in eukaryotes	3

Expression

Expression pattern

Entrez Gene ID^*

7491296

7478845

100811431

100784007

112416091

25499036

25490252

828039

830761

103868214

103836750

100267476

107946069

107931227

107943240

111200819

125586400

106381621

102624815

101245392

102591880

107774979

107789212

107830027

4332800

103634670

123147891

123164685

123156232

123413484

8083648

100843592

5722901

66055332

The preparation time of this page was 0.4 [sec].


Species	ppo	gma	mtr	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	3	2	2	1	3	2	1	1	1	3	1	1	3	1	1	1	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7491296 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7491296 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**