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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-m.5   DXR   1-deoxy-D-xylulose-5-phosphate reductoisomerase 
 sly-u.5   DXR   1-deoxy-D-xylulose-5-phosphate reductoisomerase 
 sly-r.6   DXR   1-deoxy-D-xylulose-5-phosphate reductoisomerase 
 sot-r.1   102596520   1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 
 nta-r.1   107818871   1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 
 nta-r.1   107779016   1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 
 ath-u.5   DXR   1-deoxy-D-xylulose 5-phosphate reductoisomerase 
 gma-u.5   DXR2   putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase 
 gma-u.5   DXR1   1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic-like 
 gma-u.5   100784845   1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 
 bra-r.6   103837427   1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 
 vvi-u.5   100248516   1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 
 ppo-u.5   7457738   1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 
 ppo-u.5   7483502   1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 
 mtr-u.5   11438073   1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 
 mtr-u.5   25500270   1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 
 ghi-r.1   107933661   1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 
 ghi-r.1   107922972   1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 
 ghi-r.1   107890888   1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 
 bna-r.1   106347856   1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic-like 
 bna-r.1   106366165   1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 
 bna-r.1   106401597   1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic-like 
 cit-r.1   102629673   1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic-like 
 cit-r.1   102618907   1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 
 osa-u.5   4326153   1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic-like 
 zma-u.5   542023   dxr protein 
 zma-u.5   103634738   1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 
 tae-r.2   123150893   1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic-like 
 tae-r.2   123172496   1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 
 tae-r.2   123172048   1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 
 hvu-r.1   123442344   1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 
 sbi-r.1   110433457   1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 
 bdi-r.1   100836028   1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 
 cre-r.1   CHLRE_12g546050v5   uncharacterized protein 

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Top 50 coexpressed genes to DXR (sly-m.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to DXR (sly-m.5 coexpression data)

CoexMap"543682"


slyDXR | Entrez gene ID : 543682      
Species sly sot nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 3 1 2 1 3 1 1 2 2 3 3 2 1 2 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly00900 [list] [network] Terpenoid backbone biosynthesis (57 genes)
GO BP
GO:0051484 [list] [network] isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process  (1 genes)  IEA  
GO:0008299 [list] [network] isoprenoid biosynthetic process  (124 genes)  IEA  
GO CC
GO MF
GO:0030604 [list] [network] 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity  (1 genes)  IEA  
GO:0070402 [list] [network] NADPH binding  (4 genes)  IEA  
GO:0030145 [list] [network] manganese ion binding  (35 genes)  IEA  
GO:0005515 [list] [network] protein binding  (3982 genes)  IEA  
Protein NP_001234553.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  chlo 3,  cysk 2,  cyto_nucl 2,  cyto_pero 2,  cyto_E.R. 2,  cyto_plas 2  (predict for NP_001234553.2)
Subcellular
localization
TargetP
chlo 7  (predict for NP_001234553.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-m.5
for
DXR
sly-u.5
for
DXR
sly-r.6
for
DXR
sot-r.1
for
102596520
nta-r.1
for
107818871
nta-r.1
for
107779016
ath-u.5
for
DXR
gma-u.5
for
DXR2
gma-u.5
for
DXR1
gma-u.5
for
100784845
bra-r.6
for
103837427
vvi-u.5
for
100248516
ppo-u.5
for
7457738
ppo-u.5
for
7483502
mtr-u.5
for
11438073
mtr-u.5
for
25500270
ghi-r.1
for
107933661
ghi-r.1
for
107922972
ghi-r.1
for
107890888
bna-r.1
for
106347856
bna-r.1
for
106366165
bna-r.1
for
106401597
cit-r.1
for
102629673
cit-r.1
for
102618907
osa-u.5
for
4326153
zma-u.5
for
542023
zma-u.5
for
103634738
tae-r.2
for
123150893
tae-r.2
for
123172496
tae-r.2
for
123172048
hvu-r.1
for
123442344
sbi-r.1
for
110433457
bdi-r.1
for
100836028
cre-r.1
for
CHLRE_12g546050v5


Ortholog ID: 5397
Species sly sot nta nta ath gma gma gma bra vvi ppo ppo mtr mtr ghi ghi ghi bna bna bna cit cit osa zma zma tae tae tae hvu sbi bdi cre
Symbol DXR LOC102596520 LOC107818871 LOC107779016 DXR DXR2 DXR1 LOC100784845 LOC103837427 LOC100248516 LOC7457738 LOC7483502 LOC11438073 LOC25500270 LOC107933661 LOC107922972 LOC107890888 LOC106347856 LOC106401597 LOC106424859 LOC102629673 LOC102618907 LOC4326153 LOC542023 LOC103634738 LOC123150893 LOC123166476 LOC123083354 LOC123442344 LOC110433457 LOC100836028 CHLRE_12g546050v5
Function* 1-deoxy-D-xylulose-5-phosphate reductoisomerase 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 1-deoxy-D-xylulose 5-phosphate reductoisomerase putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic-like 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic-like 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic-like 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic-like 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic-like 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic-like dxr protein 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic-like 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00900 Terpenoid backbone biosynthesis 4
sly00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00900 Terpenoid backbone biosynthesis 3
sot00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00270 Cysteine and methionine metabolism 3
gma00920 Sulfur metabolism 2
gma01200 Carbon metabolism 2
gma01230 Biosynthesis of amino acids 2
gma01320 Sulfur cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00900 Terpenoid backbone biosynthesis 7
gma00920 Sulfur metabolism 3
gma01320 Sulfur cycle 3
gma00940 Phenylpropanoid biosynthesis 2
gma00290 Valine, leucine and isoleucine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00900 Terpenoid backbone biosynthesis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 3
bra00030 Pentose phosphate pathway 2
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
bra01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00860 Porphyrin metabolism 3
vvi01200 Carbon metabolism 3
vvi01210 2-Oxocarboxylic acid metabolism 2
vvi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01240 Biosynthesis of cofactors 3
ppo00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ppo00240 Pyrimidine metabolism 2
ppo01232 Nucleotide metabolism 2
ppo00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00900 Terpenoid backbone biosynthesis 4
ppo00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00906 Carotenoid biosynthesis 9
mtr00900 Terpenoid backbone biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 5
ghi04075 Plant hormone signal transduction 2
ghi00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 5
ghi04075 Plant hormone signal transduction 2
ghi00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 5
ghi04075 Plant hormone signal transduction 2
ghi00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00900 Terpenoid backbone biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00900 Terpenoid backbone biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00900 Terpenoid backbone biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00900 Terpenoid backbone biosynthesis 3
cit00380 Tryptophan metabolism 2
cit04075 Plant hormone signal transduction 2
cit00630 Glyoxylate and dicarboxylate metabolism 2
cit01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00900 Terpenoid backbone biosynthesis 7
cit00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
cit01230 Biosynthesis of amino acids 4
cit01200 Carbon metabolism 2
cit00020 Citrate cycle (TCA cycle) 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00900 Terpenoid backbone biosynthesis 8
osa00730 Thiamine metabolism 2
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00900 Terpenoid backbone biosynthesis 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00900 Terpenoid backbone biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00900 Terpenoid backbone biosynthesis 3
bdi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01230 Biosynthesis of amino acids 5
cre00906 Carotenoid biosynthesis 4
cre00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
cre00860 Porphyrin metabolism 2
cre00900 Terpenoid backbone biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 543682 102596520 107818871 107779016 836400 100805316 100790607 100784845 103837427 100248516 7457738 7483502 11438073 25500270 107933661 107922972 107890888 106347856 106401597 106424859 102629673 102618907 4326153 542023 103634738 123150893 123166476 123083354 123442344 110433457 100836028 5719579
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