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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7483502   1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 
 ppo-r.4   7483502   1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 
 ppo-u.5   7457738   1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 
 gma-u.5   100784845   1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 
 gma-u.5   DXR1   1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic-like 
 gma-u.5   DXR2   putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase 
 mtr-u.5   11438073   1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 
 mtr-u.5   25500270   1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 
 ath-u.5   DXR   1-deoxy-D-xylulose 5-phosphate reductoisomerase 
 vvi-u.5   100248516   1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 
 sly-u.5   DXR   1-deoxy-D-xylulose-5-phosphate reductoisomerase 
 osa-u.5   4326153   1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic-like 
 zma-u.5   103634738   1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 
 zma-u.5   542023   dxr protein 

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Top 50 coexpressed genes to 7483502 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7483502 (ppo-u.5 coexpression data)

CoexMap"7483502"


ppoLOC7483502 | Entrez gene ID : 7483502    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 3 2 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop00900 [list] [network] Terpenoid backbone biosynthesis (75 genes)
GO BP
GO:0051484 [list] [network] isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process  (2 genes)  IEA  
GO:0008299 [list] [network] isoprenoid biosynthetic process  (136 genes)  IEA  
GO CC
GO MF
GO:0030604 [list] [network] 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity  (2 genes)  IEA  
GO:0070402 [list] [network] NADPH binding  (4 genes)  IEA  
GO:0030145 [list] [network] manganese ion binding  (73 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4916 genes)  IEA  
Protein XP_024438589.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  chlo 4,  nucl 1,  vacu 1  (predict for XP_024438589.2)
Subcellular
localization
TargetP
chlo 8  (predict for XP_024438589.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7483502

.
ppo-r.4
for
7483502

.
ppo-u.5
for
7457738

.
gma-u.5
for
100784845

.
gma-u.5
for
DXR1

.
gma-u.5
for
DXR2

.
mtr-u.5
for
11438073

.
mtr-u.5
for
25500270

.
ath-u.5
for
DXR

.
vvi-u.5
for
100248516

.
sly-u.5
for
DXR

.
osa-u.5
for
4326153

.
zma-u.5
for
103634738

.
zma-u.5
for
542023

.


Ortholog ID: 5397
Species ath gma gma sly osa zma zma bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot cit cit bdi nta nta
Symbol DXR DXR1 DXR2 DXR LOC4326153 LOC103634738 LOC542023 LOC103837427 LOC100248516 LOC7483502 LOC7457738 LOC25500270 LOC11438073 LOC123166476 LOC123150893 LOC123442344 LOC107922972 LOC107890888 LOC106424859 LOC106401597 CHLRE_12g546050v5 LOC110433457 LOC102596520 LOC102618907 LOC102629673 LOC100836028 LOC107818871 LOC107779016
Function* 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic-like putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1-deoxy-D-xylulose-5-phosphate reductoisomerase 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic-like 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic dxr protein 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic-like 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic-like 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic-like uncharacterized protein 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic-like 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00900 Terpenoid backbone biosynthesis 7
gma00920 Sulfur metabolism 3
gma01320 Sulfur cycle 3
gma00940 Phenylpropanoid biosynthesis 2
gma00290 Valine, leucine and isoleucine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00270 Cysteine and methionine metabolism 3
gma00920 Sulfur metabolism 2
gma01200 Carbon metabolism 2
gma01230 Biosynthesis of amino acids 2
gma01320 Sulfur cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00900 Terpenoid backbone biosynthesis 4
sly00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00900 Terpenoid backbone biosynthesis 8
osa00730 Thiamine metabolism 2
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00900 Terpenoid backbone biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00900 Terpenoid backbone biosynthesis 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 3
bra00030 Pentose phosphate pathway 2
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
bra01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00860 Porphyrin metabolism 3
vvi01200 Carbon metabolism 3
vvi01210 2-Oxocarboxylic acid metabolism 2
vvi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00900 Terpenoid backbone biosynthesis 4
ppo00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01240 Biosynthesis of cofactors 3
ppo00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ppo00240 Pyrimidine metabolism 2
ppo01232 Nucleotide metabolism 2
ppo00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00906 Carotenoid biosynthesis 9
mtr00900 Terpenoid backbone biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 5
ghi04075 Plant hormone signal transduction 2
ghi00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 5
ghi04075 Plant hormone signal transduction 2
ghi00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00900 Terpenoid backbone biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00900 Terpenoid backbone biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01230 Biosynthesis of amino acids 5
cre00906 Carotenoid biosynthesis 4
cre00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
cre00860 Porphyrin metabolism 2
cre00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00900 Terpenoid backbone biosynthesis 3
sot00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00900 Terpenoid backbone biosynthesis 7
cit00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
cit01230 Biosynthesis of amino acids 4
cit01200 Carbon metabolism 2
cit00020 Citrate cycle (TCA cycle) 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00900 Terpenoid backbone biosynthesis 3
cit00380 Tryptophan metabolism 2
cit04075 Plant hormone signal transduction 2
cit00630 Glyoxylate and dicarboxylate metabolism 2
cit01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00900 Terpenoid backbone biosynthesis 3
bdi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 11
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836400 100790607 100805316 543682 4326153 103634738 542023 103837427 100248516 7483502 7457738 25500270 11438073 123166476 123150893 123442344 107922972 107890888 106424859 106401597 5719579 110433457 102596520 102618907 102629673 100836028 107818871 107779016
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