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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-r.6   101245499   THO complex subunit 1 
 sly-u.5   101245499   THO complex subunit 1 
 sot-r.1   102589544   THO complex subunit 1 
 nta-r.1   107832705   THO complex subunit 1 
 nta-r.1   107828687   THO complex subunit 1 
 ath-u.5   THO1   nuclear matrix protein-like protein 
 gma-u.5   100781333   THO complex subunit 1 
 bra-r.6   103850354   THO complex subunit 1 
 vvi-u.5   100250474   THO complex subunit 1 
 vvi-u.5   100262610   THO complex subunit 1 
 ppo-u.5   7460257   THO complex subunit 1 
 ppo-u.5   7455804   THO complex subunit 1 
 mtr-u.5   112420425   THO complex subunit 1 
 ghi-r.1   107897015   THO complex subunit 1 
 ghi-r.1   107927603   THO complex subunit 1 
 bna-r.1   106383003   THO complex subunit 1 
 bna-r.1   106418721   THO complex subunit 1 
 cit-r.1   102612813   THO complex subunit 1 
 osa-u.5   4331353   THO complex subunit 1 
 zma-u.5   100304252   THO complex subunit 1 
 tae-r.2   123094024   THO complex subunit 1 
 tae-r.2   123099218   THO complex subunit 1 
 hvu-r.1   123450042   THO complex subunit 1 
 sbi-r.1   8078017   THO complex subunit 1 
 bdi-r.1   100832078   THO complex subunit 1 
 cre-r.1   CHLRE_16g695300v5   uncharacterized protein 

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Top 50 coexpressed genes to 101245499 (sly-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101245499 (sly-r.6 coexpression data)

CoexMap"101245499"


slyLOC101245499 | Entrez gene ID : 101245499      
Species sly sot nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 2 1 2 1 1 1 2 2 1 2 2 1 1 1 2 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly03013 [list] [network] Nucleocytoplasmic transport (106 genes)
sly03040 [list] [network] Spliceosome (385 genes)
GO BP
GO:0032784 [list] [network] regulation of DNA-templated transcription elongation  (28 genes)  IEA  
GO:0006406 [list] [network] mRNA export from nucleus  (32 genes)  IEA  
GO CC
GO:0000445 [list] [network] THO complex part of transcription export complex  (6 genes)  IEA  
GO MF
Protein XP_004230044.1 [sequence] [blastp]
XP_025888042.1 [sequence] [blastp]
XP_025888043.1 [sequence] [blastp]
XP_025888045.1 [sequence] [blastp]
XP_069148184.1 [sequence] [blastp]
XP_069148187.1 [sequence] [blastp]
XP_069148191.1 [sequence] [blastp]
XP_069148195.1 [sequence] [blastp]
XP_069148199.1 [sequence] [blastp]
XP_069148210.1 [sequence] [blastp]
XP_069148215.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 8,  chlo 1,  E.R. 1,  cyto_mito 1  (predict for XP_004230044.1)
cyto 5,  chlo 3,  cyto_nucl 3,  cyto_E.R. 3  (predict for XP_025888042.1)
cyto 5,  chlo 2,  nucl 1,  plas 1,  E.R. 1,  cyto_mito 1,  nucl_plas 1,  E.R._plas 1  (predict for XP_025888043.1)
chlo 3,  plas 3,  nucl 1,  cyto_nucl 1,  cysk_plas 1,  E.R._plas 1  (predict for XP_025888045.1)
cyto 7,  chlo 1,  E.R. 1,  cyto_mito 1  (predict for XP_069148184.1)
cyto 3,  E.R. 2,  E.R._plas 2,  plas 1,  chlo 1,  nucl 1,  mito 1,  pero 1,  cysk 1,  chlo_mito 1,  cysk_nucl 1  (predict for XP_069148187.1)
E.R. 3,  cyto 2,  nucl 1,  mito 1,  E.R._vacu 1,  cyto_pero 1,  cyto_plas 1  (predict for XP_069148191.1)
E.R. 3,  cyto 2,  nucl 1,  mito 1,  E.R._vacu 1,  cyto_pero 1,  cyto_plas 1  (predict for XP_069148195.1)
E.R. 3,  cyto 3,  E.R._plas 2,  nucl 1,  plas 1,  mito 1,  pero 1,  cysk_nucl 1  (predict for XP_069148199.1)
cyto 4,  E.R. 2,  cyto_pero 2,  cyto_plas 2  (predict for XP_069148210.1)
cyto 4,  E.R. 2,  cyto_pero 2,  cyto_plas 2  (predict for XP_069148215.1)
Subcellular
localization
TargetP
other 7  (predict for XP_004230044.1)
other 7  (predict for XP_025888042.1)
other 7,  mito 3  (predict for XP_025888043.1)
other 7  (predict for XP_025888045.1)
other 7,  mito 3  (predict for XP_069148184.1)
other 9  (predict for XP_069148187.1)
other 9  (predict for XP_069148191.1)
other 9  (predict for XP_069148195.1)
other 9  (predict for XP_069148199.1)
other 9  (predict for XP_069148210.1)
other 9  (predict for XP_069148215.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-r.6
for
101245499
sly-u.5
for
101245499
sot-r.1
for
102589544
nta-r.1
for
107832705
nta-r.1
for
107828687
ath-u.5
for
THO1
gma-u.5
for
100781333
bra-r.6
for
103850354
vvi-u.5
for
100250474
vvi-u.5
for
100262610
ppo-u.5
for
7460257
ppo-u.5
for
7455804
mtr-u.5
for
112420425
ghi-r.1
for
107897015
ghi-r.1
for
107927603
bna-r.1
for
106383003
bna-r.1
for
106418721
cit-r.1
for
102612813
osa-u.5
for
4331353
zma-u.5
for
100304252
tae-r.2
for
123094024
tae-r.2
for
123099218
hvu-r.1
for
123450042
sbi-r.1
for
8078017
bdi-r.1
for
100832078
cre-r.1
for
CHLRE_16g695300v5


Ortholog ID: 8588
Species sly sot nta nta ath gma bra vvi vvi ppo ppo mtr ghi ghi bna bna cit osa zma tae tae hvu sbi bdi cre
Symbol LOC101245499 LOC102589544 LOC107832705 LOC107828687 THO1 LOC100781333 LOC103850354 LOC100250474 LOC100262610 LOC7460257 LOC7455804 LOC112420425 LOC107897015 LOC107927603 LOC106383003 LOC106418721 LOC102612813 LOC4331353 LOC100304252 LOC123094024 LOC123099218 LOC123450042 LOC8078017 LOC100832078 CHLRE_16g695300v5
Function* THO complex subunit 1 THO complex subunit 1 THO complex subunit 1 THO complex subunit 1 nuclear matrix protein-like protein THO complex subunit 1 THO complex subunit 1 THO complex subunit 1 THO complex subunit 1 THO complex subunit 1 THO complex subunit 1 THO complex subunit 1 THO complex subunit 1 THO complex subunit 1 THO complex subunit 1 THO complex subunit 1 THO complex subunit 1 THO complex subunit 1 THO complex subunit 1 THO complex subunit 1 THO complex subunit 1 THO complex subunit 1 THO complex subunit 1 THO complex subunit 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly03022 Basal transcription factors 2
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 2
sot03022 Basal transcription factors 2
sot03013 Nucleocytoplasmic transport 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 4
nta03008 Ribosome biogenesis in eukaryotes 2
nta03040 Spliceosome 2
nta03018 RNA degradation 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 7
nta04120 Ubiquitin mediated proteolysis 5
nta03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath03013 Nucleocytoplasmic transport 5
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03082 ATP-dependent chromatin remodeling 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 3
vvi03018 RNA degradation 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 2
ppo00511 Other glycan degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 4
mtr03083 Polycomb repressive complex 3
mtr04120 Ubiquitin mediated proteolysis 3
mtr04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi03022 Basal transcription factors 3
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi03022 Basal transcription factors 3
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 2
osa03010 Ribosome 2
osa00510 N-Glycan biosynthesis 2
osa04141 Protein processing in endoplasmic reticulum 2
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 5
zma03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 5
tae03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae03060 Protein export 3
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 4
sbi03040 Spliceosome 3
sbi04141 Protein processing in endoplasmic reticulum 2
sbi04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00190 Oxidative phosphorylation 4
bdi00195 Photosynthesis 4
bdi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03015 mRNA surveillance pathway 2
cre03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101245499 102589544 107832705 107828687 830846 100781333 103850354 100250474 100262610 7460257 7455804 112420425 107897015 107927603 106383003 106418721 102612813 4331353 100304252 123094024 123099218 123450042 8078017 100832078 5724875
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