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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_16g695300v5   uncharacterized protein 
 ath-u.5   THO1   nuclear matrix protein-like protein 
 gma-u.5   100781333   THO complex subunit 1 
 sly-u.5   101245499   THO complex subunit 1 
 osa-u.5   4331353   THO complex subunit 1 
 zma-u.5   100304252   THO complex subunit 1 
 vvi-u.5   100262610   THO complex subunit 1 
 vvi-u.5   100250474   THO complex subunit 1 
 ppo-u.5   7460257   THO complex subunit 1 
 ppo-u.5   7455804   THO complex subunit 1 
 mtr-u.5   112420425   THO complex subunit 1 

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Top 50 coexpressed genes to CHLRE_16g695300v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_16g695300v5 (cre-r.1 coexpression data)

CoexMap"5724875"


creCHLRE_16g695300v5 | Entrez gene ID : 5724875    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 1 1 2 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0032784 [list] [network] regulation of DNA-templated transcription elongation  (17 genes)  IEA  
GO:0006406 [list] [network] mRNA export from nucleus  (27 genes)  IEA  
GO CC
GO:0000445 [list] [network] THO complex part of transcription export complex  (7 genes)  IEA  
GO MF
Protein XP_042915272.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  cyto 4  (predict for XP_042915272.1)
Subcellular
localization
TargetP
other 7  (predict for XP_042915272.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_16g695300v5

.
ath-u.5
for
THO1

.
gma-u.5
for
100781333

.
sly-u.5
for
101245499

.
osa-u.5
for
4331353

.
zma-u.5
for
100304252

.
vvi-u.5
for
100262610

.
vvi-u.5
for
100250474

.
ppo-u.5
for
7460257

.
ppo-u.5
for
7455804

.
mtr-u.5
for
112420425

.


Ortholog ID: 8588
Species ath gma sly osa zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol THO1 LOC100781333 LOC101245499 LOC4331353 LOC100304252 LOC103850354 LOC100250474 LOC7455804 LOC7460257 LOC112420425 LOC123094024 LOC123099218 LOC123450042 LOC107927603 LOC107897015 LOC106418721 LOC106383003 CHLRE_16g695300v5 LOC8078017 LOC102589544 LOC102612813 LOC100832078 LOC107832705 LOC107828687
Function* nuclear matrix protein-like protein THO complex subunit 1 THO complex subunit 1 THO complex subunit 1 THO complex subunit 1 THO complex subunit 1 THO complex subunit 1 THO complex subunit 1 THO complex subunit 1 THO complex subunit 1 THO complex subunit 1 THO complex subunit 1 THO complex subunit 1 THO complex subunit 1 THO complex subunit 1 THO complex subunit 1 THO complex subunit 1 uncharacterized protein THO complex subunit 1 THO complex subunit 1 THO complex subunit 1 THO complex subunit 1 THO complex subunit 1 THO complex subunit 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath03013 Nucleocytoplasmic transport 5
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly03022 Basal transcription factors 2
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 2
osa03010 Ribosome 2
osa00510 N-Glycan biosynthesis 2
osa04141 Protein processing in endoplasmic reticulum 2
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 5
zma03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03082 ATP-dependent chromatin remodeling 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 2
ppo00511 Other glycan degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 4
mtr03083 Polycomb repressive complex 3
mtr04120 Ubiquitin mediated proteolysis 3
mtr04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 5
tae03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae03060 Protein export 3
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi03022 Basal transcription factors 3
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi03022 Basal transcription factors 3
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03015 mRNA surveillance pathway 2
cre03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 4
sbi03040 Spliceosome 3
sbi04141 Protein processing in endoplasmic reticulum 2
sbi04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 2
sot03022 Basal transcription factors 2
sot03013 Nucleocytoplasmic transport 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00190 Oxidative phosphorylation 4
bdi00195 Photosynthesis 4
bdi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 4
nta03008 Ribosome biogenesis in eukaryotes 2
nta03040 Spliceosome 2
nta03018 RNA degradation 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 7
nta04120 Ubiquitin mediated proteolysis 5
nta03013 Nucleocytoplasmic transport 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 830846 100781333 101245499 4331353 100304252 103850354 100250474 7455804 7460257 112420425 123094024 123099218 123450042 107927603 107897015 106418721 106383003 5724875 8078017 102589544 102612813 100832078 107832705 107828687
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