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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-r.6   101265993   pentatricopeptide repeat-containing protein DOT4, chloroplastic 
 sly-u.5   101265993   pentatricopeptide repeat-containing protein DOT4, chloroplastic 
 sot-r.1   102591398   pentatricopeptide repeat-containing protein DOT4, chloroplastic-like 
 nta-r.1   107770657   pentatricopeptide repeat-containing protein At4g13650-like 
 nta-r.1   107828751   pentatricopeptide repeat-containing protein DOT4, chloroplastic-like 
 gma-u.5   100775939   pentatricopeptide repeat-containing protein At5g39350 
 vvi-u.5   100267994   pentatricopeptide repeat-containing protein At5g39350 
 osa-u.5   4331862   pentatricopeptide repeat-containing protein DOT4, chloroplastic 
 zma-u.5   103639494   pentatricopeptide repeat-containing protein DOT4, chloroplastic 
 bdi-r.1   106865388   pentatricopeptide repeat-containing protein At4g33990 

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Top 50 coexpressed genes to 101265993 (sly-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101265993 (sly-r.6 coexpression data)

CoexMap"101265993"


slyLOC101265993 | Entrez gene ID : 101265993    
Species sly sot nta gma vvi osa zma bdi sbi cit mtr bra tae ath bna hvu ppo ghi cre
Paralog 2 1 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (280 genes)  IEA  
GO CC
GO:0043231 [list] [network] intracellular membrane-bounded organelle  (5687 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1208 genes)  IEA  
GO:0005515 [list] [network] protein binding  (3982 genes)  IEA  
Protein XP_004233437.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  cyto 2,  nucl 1,  extr 1,  vacu 1,  cysk_nucl 1,  mito_plas 1  (predict for XP_004233437.1)
Subcellular
localization
TargetP
scret 6,  other 5  (predict for XP_004233437.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-r.6
for
101265993
sly-u.5
for
101265993
sot-r.1
for
102591398
nta-r.1
for
107770657
nta-r.1
for
107828751
gma-u.5
for
100775939
vvi-u.5
for
100267994
osa-u.5
for
4331862
zma-u.5
for
103639494
bdi-r.1
for
106865388


Ortholog ID: 14928
Species sly sot nta nta gma vvi osa zma bdi
Symbol LOC101265993 LOC102591398 LOC107770657 LOC107828751 LOC100775939 LOC100267994 LOC4331862 LOC103639494 LOC106865388
Function* pentatricopeptide repeat-containing protein DOT4, chloroplastic pentatricopeptide repeat-containing protein DOT4, chloroplastic-like pentatricopeptide repeat-containing protein At4g13650-like pentatricopeptide repeat-containing protein DOT4, chloroplastic-like pentatricopeptide repeat-containing protein At5g39350 pentatricopeptide repeat-containing protein At5g39350 pentatricopeptide repeat-containing protein DOT4, chloroplastic pentatricopeptide repeat-containing protein DOT4, chloroplastic pentatricopeptide repeat-containing protein At4g33990
Coexmap

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Coexpression

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KEGG Info
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101265993 102591398 107770657 107828751 100775939 100267994 4331862 103639494 106865388
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