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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-r.6   ARF2A   auxin response factor 2A 
 sly-u.5   ARF2A   auxin response factor 2A 
 sly-u.5   ARF2B   auxin response factor 2B 
 sot-r.1   102594206   auxin response factor 2-like 
 sot-r.1   102582348   auxin response factor 2-like 
 nta-r.1   107798348   auxin response factor 2A 
 nta-r.1   107789425   auxin response factor 2B 
 nta-r.1   107804166   auxin response factor 2B 
 ath-u.5   ARF2   auxin response factor 2 
 gma-u.5   100815956   auxin response factor 2B 
 gma-u.5   100797082   auxin response factor 2B 
 gma-u.5   100803498   auxin response factor 2B 
 bra-r.6   ARF2-2   auxin response factor 2 
 bra-r.6   ARF2-1   auxin response factor 2 
 bra-r.6   ARF2-3   auxin response factor 2 
 vvi-u.5   100268072   auxin response factor 2B 
 vvi-u.5   100250592   auxin response factor 2A 
 ppo-u.5   7456643   auxin response factor 2 
 ppo-u.5   7484881   auxin response factor 2 
 mtr-u.5   11439423   auxin response factor 2B 
 ghi-r.1   107944673   auxin response factor 2 
 ghi-r.1   121232023   auxin response factor 2B 
 ghi-r.1   107923948   auxin response factor 2 
 bna-r.1   106382765   auxin response factor 2 
 bna-r.1   111209353   auxin response factor 2 
 bna-r.1   106431700   auxin response factor 2 
 cit-r.1   ARF   auxin-response factor 
 osa-u.5   4352211   auxin response factor 24-like 
 osa-u.5   4350610   auxin response factor 23-like 
 osa-u.5   4326957   auxin response factor 4-like 
 zma-u.5   100274571   Auxin response factor 10 
 zma-u.5   100383196   uncharacterized LOC100383196 
 zma-u.5   100273501   uncharacterized LOC100273501 
 tae-r.2   123063198   auxin response factor 4 
 tae-r.2   123063246   auxin response factor 4 
 tae-r.2   606348   auxin response factor 4 
 hvu-r.1   123445313   auxin response factor 4-like 
 hvu-r.1   123445343   auxin response factor 4-like 
 sbi-r.1   8081300   auxin response factor 4 
 sbi-r.1   8070929   auxin response factor 4 
 sbi-r.1   8064058   auxin response factor 24 
 bdi-r.1   100823699   auxin response factor 23 
 bdi-r.1   100834181   auxin response factor 4 
 bdi-r.1   100841363   auxin response factor 24 

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Top 50 coexpressed genes to ARF2A (sly-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to ARF2A (sly-r.6 coexpression data)

CoexMap"778240"


slyARF2A | Entrez gene ID : 778240      
Species sly sot nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 3 2 3 1 3 3 2 2 1 3 3 1 3 3 3 2 3 3 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly04075 [list] [network] Plant hormone signal transduction (437 genes)
GO BP
GO:0009725 [list] [network] response to hormone  (341 genes)  IEA  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1608 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (2947 genes)  IEA  
GO MF
GO:0003677 [list] [network] DNA binding  (1883 genes)  IEA  
GO:0005515 [list] [network] protein binding  (3982 genes)  IEA  
Protein NP_001233765.1 [sequence] [blastp]
XP_010318417.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001233765.1)
nucl 10  (predict for XP_010318417.2)
Subcellular
localization
TargetP
other 7,  chlo 5  (predict for NP_001233765.1)
other 8  (predict for XP_010318417.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-r.6
for
ARF2A
sly-u.5
for
ARF2A
sly-u.5
for
ARF2B
sot-r.1
for
102594206
sot-r.1
for
102582348
nta-r.1
for
107798348
nta-r.1
for
107789425
nta-r.1
for
107804166
ath-u.5
for
ARF2
gma-u.5
for
100815956
gma-u.5
for
100797082
gma-u.5
for
100803498
bra-r.6
for
ARF2-2
bra-r.6
for
ARF2-1
bra-r.6
for
ARF2-3
vvi-u.5
for
100268072
vvi-u.5
for
100250592
ppo-u.5
for
7456643
ppo-u.5
for
7484881
mtr-u.5
for
11439423
ghi-r.1
for
107944673
ghi-r.1
for
121232023
ghi-r.1
for
107923948
bna-r.1
for
106382765
bna-r.1
for
111209353
bna-r.1
for
106431700
cit-r.1
for
ARF
osa-u.5
for
4352211
osa-u.5
for
4350610
osa-u.5
for
4326957
zma-u.5
for
100274571
zma-u.5
for
100383196
zma-u.5
for
100273501
tae-r.2
for
123063198
tae-r.2
for
123063246
tae-r.2
for
606348
hvu-r.1
for
123445313
hvu-r.1
for
123445343
sbi-r.1
for
8081300
sbi-r.1
for
8070929
sbi-r.1
for
8064058
bdi-r.1
for
100823699
bdi-r.1
for
100834181
bdi-r.1
for
100841363


Ortholog ID: 2854
Species sly sly sot sot nta nta nta ath gma gma gma bra bra bra vvi vvi ppo ppo mtr ghi ghi ghi bna bna bna cit osa osa osa zma zma zma tae tae tae hvu hvu sbi sbi sbi bdi bdi bdi
Symbol ARF2A ARF2B LOC102594206 LOC102582348 LOC107798348 LOC107804166 LOC107831629 ARF2 LOC100815956 LOC100797082 LOC100780892 ARF2-2 ARF2-1 ARF2-3 LOC100268072 LOC100250592 LOC7456643 LOC7484881 LOC11439423 LOC121232023 LOC121219292 LOC107946610 LOC111209353 LOC106366087 LOC106379011 ARF LOC4352211 LOC4350610 LOC4326957 LOC100273501 LOC100273544 LOC100274564 LOC123063198 LOC606348 LOC123072105 LOC123445313 LOC123445343 LOC8081300 LOC8070929 LOC8064058 LOC100823699 LOC100834181 LOC100841363
Function* auxin response factor 2A auxin response factor 2B auxin response factor 2-like auxin response factor 2-like auxin response factor 2A auxin response factor 2B auxin response factor 2A auxin response factor 2 auxin response factor 2B auxin response factor 2B auxin response factor 2B auxin response factor 2 auxin response factor 2 auxin response factor 2 auxin response factor 2B auxin response factor 2A auxin response factor 2 auxin response factor 2 auxin response factor 2B auxin response factor 2B auxin response factor 2B auxin response factor 2A auxin response factor 2 auxin response factor 2-like auxin response factor 2-like auxin-response factor auxin response factor 24-like auxin response factor 23-like auxin response factor 4-like uncharacterized LOC100273501 Auxin response factor 2 auxin response factor auxin response factor 4 auxin response factor 4 auxin response factor 4 auxin response factor 4-like auxin response factor 4-like auxin response factor 4 auxin response factor 4 auxin response factor 24 auxin response factor 23 auxin response factor 4 auxin response factor 24
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 3
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 5
sot04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 6
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 4
bra00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 3
bra03040 Spliceosome 2
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 5
vvi04016 MAPK signaling pathway - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 7
ghi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 7
ghi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 7
ghi00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 5
osa04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 11
zma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 11
zma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 6
tae03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04075 Plant hormone signal transduction 3
hvu04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 3
sbi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 3
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 778240 101249712 102594206 102582348 107798348 107804166 107831629 836321 100815956 100797082 100780892 103874638 103854970 103837398 100268072 100250592 7456643 7484881 11439423 121232023 121219292 107946610 111209353 106366087 106379011 102577963 4352211 4350610 4326957 100273501 100273544 100274564 123063198 606348 123072105 123445313 123445343 8081300 8070929 8064058 100823699 100834181 100841363
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