ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sly-u.5	101248495	DNA-directed RNA polymerase 3, chloroplastic
sly-r.6	101248495	DNA-directed RNA polymerase 3, chloroplastic
sly-u.5	101248533	DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial
sly-u.5	101255094	DNA-directed RNA polymerase 1, mitochondrial
sot-r.1	102578215	DNA-directed RNA polymerase 1, mitochondrial
sot-r.1	102586229	DNA-directed RNA polymerase 3, chloroplastic
sot-r.1	102596586	DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
nta-r.1	107784816	DNA-directed RNA polymerase 1B, mitochondrial
nta-r.1	107785601	DNA-directed RNA polymerase 1, mitochondrial
nta-r.1	107784418	DNA-directed RNA polymerase 3, chloroplastic
ath-u.5	SCA3	DNA/RNA polymerases superfamily protein
ath-u.5	AT5G15700	DNA/RNA polymerases superfamily protein
ath-u.5	MGP3	male gametophyte defective 3
gma-u.5	100779299	DNA-directed RNA polymerase 3B, chloroplastic
gma-u.5	100814762	DNA-directed RNA polymerase 1B, mitochondrial
gma-u.5	100802776	DNA-directed RNA polymerase 3B, chloroplastic
bra-r.6	103851000	DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
bra-r.6	103864521	DNA-directed RNA polymerase 3, chloroplastic
bra-r.6	103842381	DNA-directed RNA polymerase 3, chloroplastic
vvi-u.5	100250202	DNA-directed RNA polymerase 3, chloroplastic
vvi-u.5	100263361	DNA-directed RNA polymerase 1, mitochondrial
vvi-u.5	100266898	DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
ppo-u.5	18107462	DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
ppo-u.5	7483911	DNA-directed RNA polymerase 1B, mitochondrial
mtr-u.5	11433844	DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
mtr-u.5	11419494	DNA-directed RNA polymerase 1B, mitochondrial
ghi-r.1	107946348	DNA-directed RNA polymerase 1B, mitochondrial
ghi-r.1	107891993	DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial
ghi-r.1	107907454	DNA-directed RNA polymerase 3, chloroplastic
bna-r.1	125578528	DNA-directed RNA polymerase 3, chloroplastic
bna-r.1	106446629	DNA-directed RNA polymerase 3, chloroplastic
bna-r.1	106446530	DNA-directed RNA polymerase 3, chloroplastic
cit-r.1	102622473	DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
cit-r.1	102630262	DNA-directed RNA polymerase 1B, mitochondrial
cit-r.1	102620149	DNA-directed RNA polymerase 3, chloroplastic
osa-u.5	4341695	DNA-directed RNA polymerase 3B, chloroplastic
osa-u.5	4346491	DNA-directed RNA polymerase 1B, mitochondrial
zma-u.5	541776	RNA polymerase 2
zma-u.5	541775	RNA polymerase T phage-like 1
tae-r.2	543236	DNA-directed RNA polymerase 3B, chloroplastic
tae-r.2	123149434	DNA-directed RNA polymerase 3B, chloroplastic
tae-r.2	123103348	DNA-directed RNA polymerase 1B, mitochondrial
hvu-r.1	123407275	DNA-directed RNA polymerase 3B, chloroplastic-like
hvu-r.1	123452082	DNA-directed RNA polymerase 1B, mitochondrial-like
sbi-r.1	8058432	DNA-directed RNA polymerase 3B, chloroplastic
sbi-r.1	8079207	DNA-directed RNA polymerase 1B, mitochondrial
bdi-r.1	100824329	DNA-directed RNA polymerase 1B, mitochondrial
bdi-r.1	100839892	DNA-directed RNA polymerase 3, chloroplastic
cre-r.1	CHLRE_02g075600v5	uncharacterized protein

Top 50 coexpressed genes to 101248495 (sly-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 101248495 (sly-u.5 coexpression data)

CoexMap"101248495"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006390 [list] [network] mitochondrial transcription

(3 genes)

IEA

GO CC

GO:0034245 [list] [network] mitochondrial DNA-directed RNA polymerase complex

(3 genes)

IEA

GO MF

GO:0003899 [list] [network] DNA-directed RNA polymerase activity	(6 genes)	IEA
GO:0003677 [list] [network] DNA binding	(1883 genes)	IEA

Protein

XP_004242994.2 [sequence] [blastp]

Subcellular
localization
wolf

chlo 6, mito 2, cyto_mito 1, nucl 1

(predict for XP_004242994.2)

Subcellular
localization
TargetP

mito 7, other 5

(predict for XP_004242994.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sly-u.5 for 101248495	sly-r.6 for 101248495	sly-u.5 for 101248533	sly-u.5 for 101255094	sot-r.1 for 102578215	sot-r.1 for 102586229	sot-r.1 for 102596586	nta-r.1 for 107784816	nta-r.1 for 107785601	nta-r.1 for 107784418	ath-u.5 for SCA3	ath-u.5 for AT5G15700	ath-u.5 for MGP3	gma-u.5 for 100779299	gma-u.5 for 100814762	gma-u.5 for 100802776	bra-r.6 for 103851000	bra-r.6 for 103864521	bra-r.6 for 103842381	vvi-u.5 for 100250202	vvi-u.5 for 100263361	vvi-u.5 for 100266898	ppo-u.5 for 18107462	ppo-u.5 for 7483911	mtr-u.5 for 11433844	mtr-u.5 for 11419494	ghi-r.1 for 107946348	ghi-r.1 for 107891993	ghi-r.1 for 107907454	bna-r.1 for 125578528	bna-r.1 for 106446629	bna-r.1 for 106446530	cit-r.1 for 102622473	cit-r.1 for 102630262	cit-r.1 for 102620149	osa-u.5 for 4341695	osa-u.5 for 4346491	zma-u.5 for 541776	zma-u.5 for 541775	tae-r.2 for 543236	tae-r.2 for 123149434	tae-r.2 for 123103348	hvu-r.1 for 123407275	hvu-r.1 for 123452082	sbi-r.1 for 8058432	sbi-r.1 for 8079207	bdi-r.1 for 100824329	bdi-r.1 for 100839892	cre-r.1 for CHLRE_02g075600v5

Ortholog

Ortholog ID: 1605

Species

sly

sot

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

SCA3

MGP3

Function^*

DNA-directed RNA polymerase 3, chloroplastic

DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial

DNA-directed RNA polymerase 1, mitochondrial

DNA-directed RNA polymerase 3, chloroplastic

DNA-directed RNA polymerase 2, chloroplastic/mitochondrial

DNA-directed RNA polymerase 3B, chloroplastic

DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial-like

DNA-directed RNA polymerase 2, chloroplastic/mitochondrial

DNA/RNA polymerases superfamily protein

male gametophyte defective 3

DNA-directed RNA polymerase 3B, chloroplastic

DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial

DNA-directed RNA polymerase 3, chloroplastic

DNA-directed RNA polymerase 1, mitochondrial

DNA-directed RNA polymerase 3, chloroplastic

DNA-directed RNA polymerase 1, mitochondrial

DNA-directed RNA polymerase 2, chloroplastic/mitochondrial

DNA-directed RNA polymerase 1B, mitochondrial

DNA-directed RNA polymerase 3, chloroplastic

DNA-directed RNA polymerase 2, chloroplastic/mitochondrial

DNA-directed RNA polymerase 1B, mitochondrial

DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial

DNA-directed RNA polymerase 1B, mitochondrial

DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial

DNA-directed RNA polymerase 3, chloroplastic

DNA-directed RNA polymerase 2, chloroplastic/mitochondrial

DNA-directed RNA polymerase 1B, mitochondrial

DNA-directed RNA polymerase 3, chloroplastic

DNA-directed RNA polymerase 3B, chloroplastic

DNA-directed RNA polymerase 1B, mitochondrial

RNA polymerase 2

RNA polymerase T phage-like 1

DNA-directed RNA polymerase 3B, chloroplastic

DNA-directed RNA polymerase 1B, mitochondrial

DNA-directed RNA polymerase 3B, chloroplastic-like

DNA-directed RNA polymerase 1B, mitochondrial-like

DNA-directed RNA polymerase 3B, chloroplastic

DNA-directed RNA polymerase 1B, mitochondrial

DNA-directed RNA polymerase 3, chloroplastic

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	5
ath03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03030	DNA replication	2
bra03410	Base excision repair	2
bra03420	Nucleotide excision repair	2
bra03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	5
bra03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	3
mtr03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	4
mtr03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	4
ghi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	4
ghi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	4
ghi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03030	DNA replication	3
bna03410	Base excision repair	3
bna03420	Nucleotide excision repair	3
bna03440	Homologous recombination	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03030	DNA replication	3
bna03410	Base excision repair	3
bna03420	Nucleotide excision repair	3
bna03440	Homologous recombination	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03030	DNA replication	3
bna03410	Base excision repair	3
bna03420	Nucleotide excision repair	3
bna03440	Homologous recombination	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03020	RNA polymerase	2
cit03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	2
zma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03020	RNA polymerase	4
tae03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03020	RNA polymerase	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2
hvu01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	4
sbi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03020	RNA polymerase	2

Expression

Expression pattern

Entrez Gene ID^*

101248495

101248533

101255094

102578215

102586229

102596586

107783504

107765810

107770404

816946

831424

843232

100779299

100783185

100781410

103842381

103831307

103830941

100250202

100263361

100266898

18107462

7483911

7485262

11433844

11419494

107891993

107934770

107916645

125578528

106446629

106368628

102622473

102630262

102620149

4341695

4346491

541776

541775

543236

123103348

123111543

123407275

123452082

8058432

8079207

100824329

100839892

5727199

The preparation time of this page was 0.2 [sec].


Species	sly	sot	nta	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	3	3	3	3	3	2	2	3	3	3	2	2	3	2	2	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 101248495 (sly-u.5 coexpression data)

Top 50 enrichment test to 101248495 (sly-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**