ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-u.5	541775	RNA polymerase T phage-like 1
zma-r.6	541775	RNA polymerase T phage-like 1
zma-m.5	541775	RNA polymerase T phage-like 1
zma-u.5	541776	RNA polymerase 2
sbi-r.1	8058432	DNA-directed RNA polymerase 3B, chloroplastic
sbi-r.1	8079207	DNA-directed RNA polymerase 1B, mitochondrial
osa-u.5	4341695	DNA-directed RNA polymerase 3B, chloroplastic
osa-u.5	4346491	DNA-directed RNA polymerase 1B, mitochondrial
tae-r.2	123103348	DNA-directed RNA polymerase 1B, mitochondrial
tae-r.2	123111543	DNA-directed RNA polymerase 1B, mitochondrial
tae-r.2	543236	DNA-directed RNA polymerase 3B, chloroplastic
hvu-r.1	123452082	DNA-directed RNA polymerase 1B, mitochondrial-like
hvu-r.1	123407275	DNA-directed RNA polymerase 3B, chloroplastic-like
bdi-r.1	100824329	DNA-directed RNA polymerase 1B, mitochondrial
bdi-r.1	100839892	DNA-directed RNA polymerase 3, chloroplastic
ath-u.5	SCA3	DNA/RNA polymerases superfamily protein
ath-u.5	AT5G15700	DNA/RNA polymerases superfamily protein
ath-u.5	MGP3	male gametophyte defective 3
gma-u.5	100783185	DNA-directed RNA polymerase 3B, chloroplastic
gma-u.5	100777921	DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial
gma-u.5	100779299	DNA-directed RNA polymerase 3B, chloroplastic
sly-u.5	101248533	DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial
sly-u.5	101248495	DNA-directed RNA polymerase 3, chloroplastic
sly-u.5	101255094	DNA-directed RNA polymerase 1, mitochondrial
bra-r.6	103864521	DNA-directed RNA polymerase 3, chloroplastic
bra-r.6	103830941	DNA-directed RNA polymerase 1, mitochondrial
bra-r.6	103831307	DNA-directed RNA polymerase 1, mitochondrial
vvi-u.5	100266898	DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
vvi-u.5	100250202	DNA-directed RNA polymerase 3, chloroplastic
vvi-u.5	100263361	DNA-directed RNA polymerase 1, mitochondrial
ppo-u.5	7483911	DNA-directed RNA polymerase 1B, mitochondrial
ppo-u.5	18097654	DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial
ppo-u.5	7485262	DNA-directed RNA polymerase 3, chloroplastic
mtr-u.5	11419494	DNA-directed RNA polymerase 1B, mitochondrial
mtr-u.5	11433844	DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
ghi-r.1	107916645	DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial
ghi-r.1	107946348	DNA-directed RNA polymerase 1B, mitochondrial
ghi-r.1	107891993	DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial
bna-r.1	125578528	DNA-directed RNA polymerase 3, chloroplastic
bna-r.1	106446629	DNA-directed RNA polymerase 3, chloroplastic
bna-r.1	106446530	DNA-directed RNA polymerase 3, chloroplastic
sot-r.1	102578215	DNA-directed RNA polymerase 1, mitochondrial
sot-r.1	102586229	DNA-directed RNA polymerase 3, chloroplastic
sot-r.1	102596586	DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
cit-r.1	102622473	DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
cit-r.1	102630262	DNA-directed RNA polymerase 1B, mitochondrial
cit-r.1	102620149	DNA-directed RNA polymerase 3, chloroplastic
nta-r.1	107784816	DNA-directed RNA polymerase 1B, mitochondrial
nta-r.1	107785601	DNA-directed RNA polymerase 1, mitochondrial
nta-r.1	107784418	DNA-directed RNA polymerase 3, chloroplastic
cre-r.1	CHLRE_02g075600v5	uncharacterized protein

Top 50 coexpressed genes to 541775 (zma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 541775 (zma-u.5 coexpression data)

CoexMap"541775"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006390 [list] [network] mitochondrial transcription

(5 genes)

IEA

GO CC

GO:0034245 [list] [network] mitochondrial DNA-directed RNA polymerase complex

(5 genes)

IEA

GO MF

GO:0003899 [list] [network] DNA-directed RNA polymerase activity	(37 genes)	IEA
GO:0003677 [list] [network] DNA binding	(2288 genes)	IEA

Protein

NP_001104931.2 [sequence] [blastp]
XP_008651832.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 5, mito 4, cyto_mito 3	(predict for NP_001104931.2)
chlo 4, cyto 3, nucl 1, mito 1, vacu 1, cysk_plas 1	(predict for XP_008651832.1)

Subcellular
localization
TargetP

mito 8	(predict for NP_001104931.2)
other 4	(predict for XP_008651832.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 541775	zma-r.6 for 541775	zma-m.5 for 541775	zma-u.5 for 541776	sbi-r.1 for 8058432	sbi-r.1 for 8079207	osa-u.5 for 4341695	osa-u.5 for 4346491	tae-r.2 for 123103348	tae-r.2 for 123111543	tae-r.2 for 543236	hvu-r.1 for 123452082	hvu-r.1 for 123407275	bdi-r.1 for 100824329	bdi-r.1 for 100839892	ath-u.5 for SCA3	ath-u.5 for AT5G15700	ath-u.5 for MGP3	gma-u.5 for 100783185	gma-u.5 for 100777921	gma-u.5 for 100779299	sly-u.5 for 101248533	sly-u.5 for 101248495	sly-u.5 for 101255094	bra-r.6 for 103864521	bra-r.6 for 103830941	bra-r.6 for 103831307	vvi-u.5 for 100266898	vvi-u.5 for 100250202	vvi-u.5 for 100263361	ppo-u.5 for 7483911	ppo-u.5 for 18097654	ppo-u.5 for 7485262	mtr-u.5 for 11419494	mtr-u.5 for 11433844	ghi-r.1 for 107916645	ghi-r.1 for 107946348	ghi-r.1 for 107891993	bna-r.1 for 125578528	bna-r.1 for 106446629	bna-r.1 for 106446530	sot-r.1 for 102578215	sot-r.1 for 102586229	sot-r.1 for 102596586	cit-r.1 for 102622473	cit-r.1 for 102630262	cit-r.1 for 102620149	nta-r.1 for 107784816	nta-r.1 for 107785601	nta-r.1 for 107784418	cre-r.1 for CHLRE_02g075600v5

Ortholog

Ortholog ID: 1605

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

SCA3

MGP3

Function^*

RNA polymerase T phage-like 1

RNA polymerase 2

DNA-directed RNA polymerase 3B, chloroplastic

DNA-directed RNA polymerase 1B, mitochondrial

DNA-directed RNA polymerase 3B, chloroplastic

DNA-directed RNA polymerase 1B, mitochondrial

DNA-directed RNA polymerase 3B, chloroplastic

DNA-directed RNA polymerase 1B, mitochondrial-like

DNA-directed RNA polymerase 3B, chloroplastic-like

DNA-directed RNA polymerase 1B, mitochondrial