ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sly-u.5	T6	class I knotted-like homeodomain protein
sly-r.6	T6	class I knotted-like homeodomain protein
sly-m.5	T6	class I knotted-like homeodomain protein
sly-u.5	KN1	homeotic protein knotted-1
sly-u.5	KN4	knotted homeodomain protein 4
sly-u.5	TKn3	knotted 3 protein
sot-r.1	POTH15	homeobox protein knotted-1-like LET6-like
sot-r.1	102579398	homeobox protein knotted-1-like 1-like
sot-r.1	102577616	POTH1
nta-r.1	107780680	homeobox protein knotted-1-like 6
nta-r.1	107826559	homeobox protein knotted-1-like LET6
ath-u.5	STM	KNOX/ELK homeobox transcription factor
ath-u.5	KNAT6	homeobox protein knotted-1-like 6
ath-u.5	KNAT1	homeobox knotted-like protein
gma-u.5	100801995	homeobox protein knotted-1-like LET6
gma-u.5	100803730	homeobox protein knotted-1-like 6
gma-u.5	100805837	homeobox protein SBH1-like
bra-r.6	103858468	homeobox protein knotted-1-like 1
bra-r.6	103852657	homeobox protein knotted-1-like 2
bra-r.6	STM	homeobox protein SHOOT MERISTEMLESS
vvi-u.5	100267474	homeobox protein SBH1
vvi-u.5	100264808	homeobox protein knotted-1-like 1
ppo-u.5	7478899	homeobox protein knotted-1-like 1
ppo-u.5	7467239	homeobox protein knotted-1-like 2
ppo-u.5	7463625	homeobox protein SBH1
mtr-u.5	25482021	homeotic protein knotted-1
mtr-u.5	11406488	homeobox protein knotted-1-like 1
mtr-u.5	11415594	homeobox protein knotted-1-like 6
ghi-r.1	107935395	homeobox protein SBH1
ghi-r.1	107933765	homeobox protein knotted-1-like 1
ghi-r.1	107930537	homeobox protein knotted-1-like 2
bna-r.1	106414253	homeobox protein knotted-1-like 6
bna-r.1	106420956	homeobox protein knotted-1-like 6
bna-r.1	106434220	homeobox protein knotted-1-like 6
cit-r.1	102615394	homeotic protein knotted-1
cit-r.1	102628261	homeobox protein knotted-1-like 6
osa-u.5	4342320	homeobox protein knotted-1-like 12
zma-u.5	100193050	uncharacterized LOC100193050
zma-u.5	100283504	KNOX1 domain containing protein
zma-u.5	100283277	homeobox protein rough sheath 1
tae-r.2	123090945	homeobox protein KNOX3
hvu-r.1	123447644	homeobox protein KNOX3
sbi-r.1	8060322	homeobox protein knotted-1-like 1
sbi-r.1	8084184	homeobox protein rough sheath 1
sbi-r.1	8071273	homeobox protein knotted-1-like 10
bdi-r.1	100821336	homeobox protein knotted-1-like 12
bdi-r.1	100830103	homeobox protein knotted-1-like 1
bdi-r.1	100832589	homeobox protein rough sheath 1

Top 50 coexpressed genes to T6 (sly-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to T6 (sly-u.5 coexpression data)

CoexMap"543520"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006357 [list] [network] regulation of transcription by RNA polymerase II

(493 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(2947 genes)

IEA

GO MF

GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding	(282 genes)	IEA
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific	(326 genes)	IEA

Protein

NP_001233941.2 [sequence] [blastp]
XP_010315866.1 [sequence] [blastp]
XP_010315867.1 [sequence] [blastp]
XP_069149237.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10	(predict for NP_001233941.2)
nucl 10	(predict for XP_010315866.1)
nucl 10	(predict for XP_010315867.1)
nucl 10	(predict for XP_069149237.1)

Subcellular
localization
TargetP

other 8	(predict for NP_001233941.2)
other 8	(predict for XP_010315866.1)
chlo 6, other 4	(predict for XP_010315867.1)
chlo 6, other 4	(predict for XP_069149237.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sly-u.5 for T6	sly-r.6 for T6	sly-m.5 for T6	sly-u.5 for KN1	sly-u.5 for KN4	sly-u.5 for TKn3	sot-r.1 for POTH15	sot-r.1 for 102579398	sot-r.1 for 102577616	nta-r.1 for 107780680	nta-r.1 for 107826559	ath-u.5 for STM	ath-u.5 for KNAT6	ath-u.5 for KNAT1	gma-u.5 for 100801995	gma-u.5 for 100803730	gma-u.5 for 100805837	bra-r.6 for 103858468	bra-r.6 for 103852657	bra-r.6 for STM	vvi-u.5 for 100267474	vvi-u.5 for 100264808	ppo-u.5 for 7478899	ppo-u.5 for 7467239	ppo-u.5 for 7463625	mtr-u.5 for 25482021	mtr-u.5 for 11406488	mtr-u.5 for 11415594	ghi-r.1 for 107935395	ghi-r.1 for 107933765	ghi-r.1 for 107930537	bna-r.1 for 106414253	bna-r.1 for 106420956	bna-r.1 for 106434220	cit-r.1 for 102615394	cit-r.1 for 102628261	osa-u.5 for 4342320	zma-u.5 for 100193050	zma-u.5 for 100283504	zma-u.5 for 100283277	tae-r.2 for 123090945	hvu-r.1 for 123447644	sbi-r.1 for 8060322	sbi-r.1 for 8084184	sbi-r.1 for 8071273	bdi-r.1 for 100821336	bdi-r.1 for 100830103	bdi-r.1 for 100832589

Ortholog

Ortholog ID: 275

Species

sly

sot

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

sbi

bdi

Symbol

KN1

TKn3

POTH15

LOC102601860

LOC107817797

LOC107781949

STM

KNAT6

KNAT2

Function^*

class I knotted-like homeodomain protein

homeotic protein knotted-1

knotted 3 protein

homeobox protein knotted-1-like LET6-like

homeotic protein knotted-1

homeobox protein knotted-1-like 1