ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
tae-r.2	123130985	metalloendoproteinase 3-MMP
tae-r.2	123157482	metalloendoproteinase 2-MMP
hvu-r.1	123402518	metalloendoproteinase 3-MMP-like
hvu-r.1	123439670	metalloendoproteinase 1-MMP-like
hvu-r.1	123449985	metalloendoproteinase 1-MMP-like
bdi-r.1	100826984	metalloendoproteinase 3-MMP
bdi-r.1	100840393	metalloendoproteinase 4-MMP
bdi-r.1	100844905	metalloendoproteinase 1-MMP
zma-u.5	103637649	metalloendoproteinase 1-MMP
zma-u.5	100285384	metalloendoproteinase 1
zma-u.5	100274259	Metalloendoproteinase 5-MMP
sbi-r.1	8068601	metalloendoproteinase 2-MMP
sbi-r.1	8058083	metalloendoproteinase 1-MMP
sbi-r.1	8061483	metalloendoproteinase 2-MMP
ath-u.5	MMP	matrix metalloproteinase
gma-u.5	100802398	metalloendoproteinase 5-MMP
gma-u.5	100803218	metalloendoproteinase 5-MMP
sly-u.5	MMP1	matrix metalloproteinases protein 3
sly-u.5	101251805	metalloendoproteinase 4-MMP
bra-r.6	103838570	metalloendoproteinase 5-MMP
bra-r.6	103866858	metalloendoproteinase 4-MMP
bra-r.6	103840707	metalloendoproteinase 3-MMP
ppo-u.5	7484874	metalloendoproteinase 3-MMP
mtr-u.5	11406532	metalloendoproteinase 2-MMP
mtr-u.5	11409998	metalloendoproteinase 2-MMP
mtr-u.5	11410103	metalloendoproteinase 1
ghi-r.1	107886072	metalloendoproteinase 1-MMP
ghi-r.1	107912216	metalloendoproteinase 4-MMP
ghi-r.1	107911886	metalloendoproteinase 4-MMP
bna-r.1	111199279	metalloendoproteinase 2-MMP-like
bna-r.1	125576314	metalloendoproteinase 2-MMP-like
bna-r.1	106376598	metalloendoproteinase 5-MMP
cit-r.1	102609561	metalloendoproteinase 3-MMP-like
cit-r.1	102616119	metalloendoproteinase 3-MMP
nta-r.1	107760134	metalloendoproteinase 1-MMP-like
nta-r.1	107768721	metalloendoproteinase 2-MMP-like
cre-r.1	CHLRE_14g609202v5	uncharacterized protein

Top 50 coexpressed genes to 123130985 (tae-r.2 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 123130985 (tae-r.2 coexpression data)

CoexMap"123130985"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0030574 [list] [network] collagen catabolic process	(14 genes)	IEA
GO:0030198 [list] [network] extracellular matrix organization	(50 genes)	IEA
GO:0006508 [list] [network] proteolysis	(2985 genes)	IEA

GO CC

GO:0031012 [list] [network] extracellular matrix

(14 genes)

IEA

GO MF

GO:0004222 [list] [network] metalloendopeptidase activity	(238 genes)	IEA
GO:0008270 [list] [network] zinc ion binding	(2838 genes)	IEA

Protein

XP_044406702.1 [sequence] [blastp]

Subcellular
localization
wolf

vacu 6, E.R._plas 1, plas 1, E.R. 1, cyto 1, extr 1

(predict for XP_044406702.1)

Subcellular
localization
TargetP

scret 9

(predict for XP_044406702.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	tae-r.2 for 123130985	tae-r.2 for 123157482	hvu-r.1 for 123402518	hvu-r.1 for 123439670	hvu-r.1 for 123449985	bdi-r.1 for 100826984	bdi-r.1 for 100840393	bdi-r.1 for 100844905	zma-u.5 for 103637649	zma-u.5 for 100285384	zma-u.5 for 100274259	sbi-r.1 for 8068601	sbi-r.1 for 8058083	sbi-r.1 for 8061483	ath-u.5 for MMP	gma-u.5 for 100802398	gma-u.5 for 100803218	sly-u.5 for MMP1	sly-u.5 for 101251805	bra-r.6 for 103838570	bra-r.6 for 103866858	bra-r.6 for 103840707	ppo-u.5 for 7484874	mtr-u.5 for 11406532	mtr-u.5 for 11409998	mtr-u.5 for 11410103	ghi-r.1 for 107886072	ghi-r.1 for 107912216	ghi-r.1 for 107911886	bna-r.1 for 111199279	bna-r.1 for 125576314	bna-r.1 for 106376598	cit-r.1 for 102609561	cit-r.1 for 102616119	nta-r.1 for 107760134	nta-r.1 for 107768721	cre-r.1 for CHLRE_14g609202v5

Ortholog

Ortholog ID: 384

Species

tae

hvu

bdi

osa

zma

sbi

ath

gma

sly

bra

ppo

mtr

ghi

sot

cit

nta

cre

Symbol

MMP

SMEP1

MMP1

MMP2

Function^*

metalloendoproteinase 4-MMP

metalloendoproteinase 1-MMP-like

metalloendoproteinase 4-MMP

metalloendoproteinase 3-MMP-like

metalloendoproteinase 1-MMP-like

metalloendoproteinase 2-MMP-like

metalloendoproteinase 3-MMP

metalloendoproteinase 1-MMP

metalloendoproteinase 3-MMP

metalloendoproteinase 2-MMP

metalloendoproteinase 1-MMP

metalloendoproteinase 1

Metalloendoproteinase 5-MMP

metalloendoproteinase 2-MMP

metalloendoproteinase 1-MMP

metalloendoproteinase 2-MMP

matrix metalloproteinase

Matrixin family protein

metalloendoproteinase 2-MMP

metalloproteinase

matrix metalloproteinases protein 3

matrix metalloproteinase 2

metalloendoproteinase 5-MMP

metalloendoproteinase 2-MMP

metalloendoproteinase 1

metalloendoproteinase 2-MMP

metalloendoproteinase 4-MMP

metalloendoproteinase 1

metalloendoproteinase 4-MMP

metalloendoproteinase 5-MMP

metalloendoproteinase 2-MMP-like

metalloendoproteinase 3-MMP-like

metalloendoproteinase 4-MMP

metalloendoproteinase 3-MMP

metalloendoproteinase 1-MMP-like

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04016	MAPK signaling pathway - plant	3
tae04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00520	Amino sugar and nucleotide sugar metabolism	3
tae01250	Biosynthesis of nucleotide sugars	3
tae03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00908	Zeatin biosynthesis	4
bdi04075	Plant hormone signal transduction	2
bdi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04016	MAPK signaling pathway - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00561	Glycerolipid metabolism	2
ath00564	Glycerophospholipid metabolism	2
ath02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04016	MAPK signaling pathway - plant	2
gma04075	Plant hormone signal transduction	2
gma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04626	Plant-pathogen interaction	4
sly04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04626	Plant-pathogen interaction	4
sly04016	MAPK signaling pathway - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00561	Glycerolipid metabolism	3
bra00564	Glycerophospholipid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00500	Starch and sucrose metabolism	5
ghi04016	MAPK signaling pathway - plant	4
ghi04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01240	Biosynthesis of cofactors	2
sot00360	Phenylalanine metabolism	2
sot00940	Phenylpropanoid biosynthesis	2
sot04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04626	Plant-pathogen interaction	3
cit04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04142	Lysosome	2
nta04626	Plant-pathogen interaction	2

Expression

Expression pattern

Entrez Gene ID^*

123106099

123052586

123099138

123402518

123439670

123413262

100826984

100844905

100828046

9270797

103637649

100285384

100274259

8068601

8058083

8061483

843353

839026

842291

100782143

547880

101055590

101260125

103838570

103831562

103830895

18104342

11409998

11442232

25494610

107912216

107915776

107945266

102592086

102591586

102616119

107760134

107776901

5726898

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Species	tae	hvu	bdi	zma	sbi	ath	gma	sly	bra	ppo	mtr	ghi	bna	cit	nta	cre	sot	vvi	osa
Paralog	2	3	3	3	3	1	2	2	3	1	3	3	3	2	2	1	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 123130985 (tae-r.2 coexpression data)

Top 50 enrichment test to 123130985 (tae-r.2 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**