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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.bio   PSRP4   plastid-specific ribosomal protein 4 
 ath-u.5   PSRP4   plastid-specific ribosomal protein 4 
 ath-r.7   PSRP4   plastid-specific ribosomal protein 4 
 ath-m.9   PSRP4   plastid-specific ribosomal protein 4 
 ath-e.2   PSRP4   plastid-specific ribosomal protein 4 
 ath-m.4.hor   PSRP4   plastid-specific ribosomal protein 4 
 ath-m.4.lig   PSRP4   plastid-specific ribosomal protein 4 
 ath-m.4.str   PSRP4   plastid-specific ribosomal protein 4 
 ath-m.4.tis   PSRP4   plastid-specific ribosomal protein 4 
 bra-r.6   103867133   30S ribosomal protein S31, chloroplastic 
 bna-r.1   111215556   30S ribosomal protein S31, chloroplastic-like 
 bna-r.1   106429318   30S ribosomal protein S31, chloroplastic 
 ghi-r.1   107958049   30S ribosomal protein S31, chloroplastic 
 ghi-r.1   107891562   30S ribosomal protein S31, chloroplastic 
 cit-r.1   102619516   30S ribosomal protein S31, chloroplastic 
 gma-u.5   100805197   30S ribosomal protein S31, chloroplastic-like 
 gma-u.5   100783058   30S ribosomal protein S31, chloroplastic 
 vvi-u.5   100258002   30S ribosomal protein S31, chloroplastic 
 ppo-u.5   7487463   30S ribosomal protein S31, chloroplastic 
 mtr-u.5   11417893   30S ribosomal protein S31, chloroplastic 
 sly-u.5   101254999   small ribosomal subunit protein bTHXc 
 sot-r.1   102586850   30S ribosomal protein S31, chloroplastic 
 nta-r.1   107819499   small ribosomal subunit protein bTHXc-like 
 nta-r.1   107794053   small ribosomal subunit protein bTHXc-like 
 osa-u.5   4338005   30S ribosomal protein S31, chloroplastic 
 zma-u.5   100282000   30S ribosomal protein S31, chloroplastic-like 
 tae-r.2   123168886   30S ribosomal protein S31, chloroplastic 
 tae-r.2   123161610   30S ribosomal protein S31, chloroplastic 
 tae-r.2   123147933   30S ribosomal protein S31, chloroplastic 
 hvu-r.1   123411282   30S ribosomal protein S31, chloroplastic 
 sbi-r.1   8056134   30S ribosomal protein S31, chloroplastic 
 bdi-r.1   100830295   30S ribosomal protein S31, chloroplastic 

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Top 50 coexpressed genes to PSRP4 (ath-m.4.bio coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PSRP4 (ath-m.4.bio coexpression data)

CoexMap"818392"


athPSRP4 | Entrez gene ID : 818392      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 2 1 1 1 1 1 2 1 1 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03010 [list] [network] Ribosome (394 genes)
GO BP
GO:0032544 [list] [network] plastid translation  (20 genes)  IMP  
GO CC
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA  
GO:0005783 [list] [network] endoplasmic reticulum  (897 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA IDA ISM  
GO:0009536 [list] [network] plastid  (5443 genes)  IMP  
GO MF
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
Protein NP_181349.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  nucl 1,  mito 1  (predict for NP_181349.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_181349.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.bio
for
PSRP4
ath-u.5
for
PSRP4
ath-r.7
for
PSRP4
ath-m.9
for
PSRP4
ath-e.2
for
PSRP4
ath-m.4.hor
for
PSRP4
ath-m.4.lig
for
PSRP4
ath-m.4.str
for
PSRP4
ath-m.4.tis
for
PSRP4
bra-r.6
for
103867133
bna-r.1
for
111215556
bna-r.1
for
106429318
ghi-r.1
for
107958049
ghi-r.1
for
107891562
cit-r.1
for
102619516
gma-u.5
for
100805197
gma-u.5
for
100783058
vvi-u.5
for
100258002
ppo-u.5
for
7487463
mtr-u.5
for
11417893
sly-u.5
for
101254999
sot-r.1
for
102586850
nta-r.1
for
107819499
nta-r.1
for
107794053
osa-u.5
for
4338005
zma-u.5
for
100282000
tae-r.2
for
123168886
tae-r.2
for
123161610
tae-r.2
for
123147933
hvu-r.1
for
123411282
sbi-r.1
for
8056134
bdi-r.1
for
100830295


Ortholog ID: 9426
Species ath bra bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol PSRP4 LOC103867133 LOC111215556 LOC106429318 LOC107958049 LOC107891562 LOC102619516 LOC100805197 LOC100783058 LOC100258002 LOC7487463 LOC11417893 LOC101254999 LOC102586850 LOC107794053 LOC107796443 LOC4338005 LOC100282000 LOC123168886 LOC123161610 LOC123147933 LOC123411282 LOC8056134 LOC100830295
Function* plastid-specific ribosomal protein 4 30S ribosomal protein S31, chloroplastic 30S ribosomal protein S31, chloroplastic-like 30S ribosomal protein S31, chloroplastic 30S ribosomal protein S31, chloroplastic 30S ribosomal protein S31, chloroplastic 30S ribosomal protein S31, chloroplastic 30S ribosomal protein S31, chloroplastic-like 30S ribosomal protein S31, chloroplastic 30S ribosomal protein S31, chloroplastic 30S ribosomal protein S31, chloroplastic 30S ribosomal protein S31, chloroplastic small ribosomal subunit protein bTHXc 30S ribosomal protein S31, chloroplastic small ribosomal subunit protein bTHXc-like small ribosomal subunit protein bTHXc 30S ribosomal protein S31, chloroplastic 30S ribosomal protein S31, chloroplastic-like 30S ribosomal protein S31, chloroplastic 30S ribosomal protein S31, chloroplastic 30S ribosomal protein S31, chloroplastic 30S ribosomal protein S31, chloroplastic 30S ribosomal protein S31, chloroplastic 30S ribosomal protein S31, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 15
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818392 103867133 111215556 106429318 107958049 107891562 102619516 100805197 100783058 100258002 7487463 11417893 101254999 102586850 107794053 107796443 4338005 100282000 123168886 123161610 123147933 123411282 8056134 100830295
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