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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.bio   AT3G13940   DNA binding / DNA-directed RNA polymerase 
 ath-u.5   AT3G13940   DNA binding / DNA-directed RNA polymerase 
 ath-r.7   AT3G13940   DNA binding / DNA-directed RNA polymerase 
 ath-m.9   AT3G13940   DNA binding / DNA-directed RNA polymerase 
 ath-e.2   AT3G13940   DNA binding / DNA-directed RNA polymerase 
 ath-m.4.hor   AT3G13940   DNA binding / DNA-directed RNA polymerase 
 ath-m.4.lig   AT3G13940   DNA binding / DNA-directed RNA polymerase 
 ath-m.4.str   AT3G13940   DNA binding / DNA-directed RNA polymerase 
 ath-m.4.tis   AT3G13940   DNA binding / DNA-directed RNA polymerase 
 bra-r.6   103842476   DNA-directed RNA polymerase I subunit rpa49 
 bna-r.1   106377555   DNA-directed RNA polymerase I subunit rpa49 
 bna-r.1   106350895   DNA-directed RNA polymerase I subunit rpa49-like 
 ghi-r.1   107950182   DNA-directed RNA polymerase I subunit rpa49 
 ghi-r.1   107939764   DNA-directed RNA polymerase I subunit rpa49 
 cit-r.1   102616137   hypothetical protein 
 gma-u.5   100812427   DNA-directed RNA polymerase I subunit rpa49 
 vvi-u.5   100263424   uncharacterized LOC100263424 
 ppo-u.5   18094841   DNA-directed RNA polymerase I subunit rpa49 
 mtr-u.5   11441148   DNA-directed RNA polymerase I subunit rpa49 
 mtr-u.5   11433564   DNA-directed RNA polymerase I subunit rpa49 
 sly-u.5   101267531   uncharacterized LOC101267531 
 sot-r.1   102603859   DNA-directed RNA polymerase I subunit rpa49 
 nta-r.1   107774854   uncharacterized LOC107774854 
 nta-r.1   107774396   rhodanese-like domain-containing protein 8, chloroplastic 
 nta-r.1   107766237   uncharacterized LOC107766237 
 osa-u.5   4350918   DNA-directed RNA polymerase I subunit rpa49 
 zma-u.5   100284469   uncharacterized LOC100284469 
 tae-r.2   123097274   DNA-directed RNA polymerase I subunit rpa49 
 tae-r.2   123092055   DNA-directed RNA polymerase I subunit rpa49 
 tae-r.2   123086023   DNA-directed RNA polymerase I subunit rpa49 
 hvu-r.1   123448414   DNA-directed RNA polymerase I subunit rpa49 
 sbi-r.1   8067921   uncharacterized LOC8067921 
 bdi-r.1   100835360   DNA-directed RNA polymerase I subunit rpa49 
 cre-r.1   CHLRE_01g070567v5   uncharacterized protein 

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Top 50 coexpressed genes to AT3G13940 (ath-m.4.bio coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G13940 (ath-m.4.bio coexpression data)

CoexMap"820607"


athAT3G13940 | Entrez gene ID : 820607      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 1 1 1 2 1 1 3 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03020 [list] [network] RNA polymerase (52 genes)
GO BP
GO:0006351 [list] [network] DNA-templated transcription  (160 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0003677 [list] [network] DNA binding  (1274 genes)  IEA  
Protein NP_188010.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 3,  cyto_pero 3,  cyto_E.R. 3,  cyto_plas 3  (predict for NP_188010.1)
Subcellular
localization
TargetP
other 9  (predict for NP_188010.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.bio
for
AT3G13940
ath-u.5
for
AT3G13940
ath-r.7
for
AT3G13940
ath-m.9
for
AT3G13940
ath-e.2
for
AT3G13940
ath-m.4.hor
for
AT3G13940
ath-m.4.lig
for
AT3G13940
ath-m.4.str
for
AT3G13940
ath-m.4.tis
for
AT3G13940
bra-r.6
for
103842476
bna-r.1
for
106377555
bna-r.1
for
106350895
ghi-r.1
for
107950182
ghi-r.1
for
107939764
cit-r.1
for
102616137
gma-u.5
for
100812427
vvi-u.5
for
100263424
ppo-u.5
for
18094841
mtr-u.5
for
11441148
mtr-u.5
for
11433564
sly-u.5
for
101267531
sot-r.1
for
102603859
nta-r.1
for
107774854
nta-r.1
for
107774396
nta-r.1
for
107766237
osa-u.5
for
4350918
zma-u.5
for
100284469
tae-r.2
for
123097274
tae-r.2
for
123092055
tae-r.2
for
123086023
hvu-r.1
for
123448414
sbi-r.1
for
8067921
bdi-r.1
for
100835360
cre-r.1
for
CHLRE_01g070567v5


Ortholog ID: 8937
Species ath bra bna bna ghi ghi cit gma vvi ppo mtr mtr sly sot nta nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol AT3G13940 LOC103842476 LOC106377555 LOC106350895 LOC107950182 LOC107939764 LOC102616137 LOC100812427 LOC100263424 LOC18094841 LOC11441148 LOC11433564 LOC101267531 LOC102603859 LOC107774854 LOC107774396 LOC107787017 LOC4350918 LOC100284469 LOC123097274 LOC123092055 LOC123086023 LOC123448414 LOC8067921 LOC100835360 CHLRE_01g070567v5
Function* DNA binding / DNA-directed RNA polymerase DNA-directed RNA polymerase I subunit rpa49 DNA-directed RNA polymerase I subunit rpa49 DNA-directed RNA polymerase I subunit rpa49-like DNA-directed RNA polymerase I subunit rpa49 DNA-directed RNA polymerase I subunit rpa49 hypothetical protein DNA-directed RNA polymerase I subunit rpa49 uncharacterized LOC100263424 DNA-directed RNA polymerase I subunit rpa49 DNA-directed RNA polymerase I subunit rpa49 DNA-directed RNA polymerase I subunit rpa49 uncharacterized LOC101267531 DNA-directed RNA polymerase I subunit rpa49 uncharacterized LOC107774854 rhodanese-like domain-containing protein 8, chloroplastic uncharacterized LOC107787017 DNA-directed RNA polymerase I subunit rpa49 uncharacterized LOC100284469 DNA-directed RNA polymerase I subunit rpa49 DNA-directed RNA polymerase I subunit rpa49 DNA-directed RNA polymerase I subunit rpa49 DNA-directed RNA polymerase I subunit rpa49 uncharacterized LOC8067921 DNA-directed RNA polymerase I subunit rpa49 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
bra03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 3
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 7
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 6
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
gma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 2
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 4
mtr03420 Nucleotide excision repair 2
mtr03008 Ribosome biogenesis in eukaryotes 2
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 3
nta00190 Oxidative phosphorylation 2
nta00195 Photosynthesis 2
nta03018 RNA degradation 2
nta04081 Hormone signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 5
nta03060 Protein export 2
nta04141 Protein processing in endoplasmic reticulum 2
nta04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 3
nta00190 Oxidative phosphorylation 2
nta00195 Photosynthesis 2
nta03018 RNA degradation 2
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 5
osa03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
tae03020 RNA polymerase 3
tae00190 Oxidative phosphorylation 2
tae00860 Porphyrin metabolism 2
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 2
bdi03008 Ribosome biogenesis in eukaryotes 2
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03020 RNA polymerase 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820607 103842476 106377555 106350895 107950182 107939764 102616137 100812427 100263424 18094841 11441148 11433564 101267531 102603859 107774854 107774396 107787017 4350918 100284469 123097274 123092055 123086023 123448414 8067921 100835360 5725760
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