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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106377555   DNA-directed RNA polymerase I subunit rpa49 
 ath-u.5   AT3G13940   DNA binding / DNA-directed RNA polymerase 
 gma-u.5   100812427   DNA-directed RNA polymerase I subunit rpa49 
 vvi-u.5   100263424   uncharacterized LOC100263424 
 ppo-u.5   18094841   DNA-directed RNA polymerase I subunit rpa49 
 mtr-u.5   11441148   DNA-directed RNA polymerase I subunit rpa49 
 mtr-u.5   11433564   DNA-directed RNA polymerase I subunit rpa49 
 sly-u.5   101267531   uncharacterized LOC101267531 
 osa-u.5   4350918   DNA-directed RNA polymerase I subunit rpa49 
 zma-u.5   100284469   uncharacterized LOC100284469 

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Top 50 coexpressed genes to 106377555 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106377555 (bna-r.1 coexpression data)

CoexMap"106377555"


bnaLOC106377555 | Entrez gene ID : 106377555    
Species bna ath gma vvi ppo mtr sly osa zma hvu cit bra ghi sbi bdi nta tae cre sot
Paralog 1 1 1 1 1 2 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03020 [list] [network] RNA polymerase (161 genes)
GO BP
GO:0006362 [list] [network] transcription elongation by RNA polymerase I  (2 genes)  IEA  
GO:0001188 [list] [network] RNA polymerase I preinitiation complex assembly  (3 genes)  IEA  
GO:0042790 [list] [network] nucleolar large rRNA transcription by RNA polymerase I  (5 genes)  IEA  
GO CC
GO:0005736 [list] [network] RNA polymerase I complex  (52 genes)  IEA  
GO MF
GO:0003677 [list] [network] DNA binding  (6522 genes)  IEA  
Protein XP_013673269.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 3,  cysk_nucl 3  (predict for XP_013673269.1)
Subcellular
localization
TargetP
other 9  (predict for XP_013673269.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106377555
ath-u.5
for
AT3G13940
gma-u.5
for
100812427
vvi-u.5
for
100263424
ppo-u.5
for
18094841
mtr-u.5
for
11441148
mtr-u.5
for
11433564
sly-u.5
for
101267531
osa-u.5
for
4350918
zma-u.5
for
100284469


Ortholog ID: 8937
Species bna bna bra ath ghi ghi cit gma vvi ppo mtr mtr sly sot nta nta osa zma tae tae hvu sbi bdi cre
Symbol LOC106350895 LOC106377555 LOC103842476 AT3G13940 LOC107950182 LOC107939764 LOC102616137 LOC100812427 LOC100263424 LOC18094841 LOC11433564 LOC11441148 LOC101267531 LOC102603859 LOC107787017 LOC107774854 LOC4350918 LOC100284469 LOC123092055 LOC123097274 LOC123448414 LOC8067921 LOC100835360 CHLRE_01g070567v5
Function* DNA-directed RNA polymerase I subunit rpa49-like DNA-directed RNA polymerase I subunit rpa49 DNA-directed RNA polymerase I subunit rpa49 DNA binding / DNA-directed RNA polymerase DNA-directed RNA polymerase I subunit rpa49 DNA-directed RNA polymerase I subunit rpa49 hypothetical protein DNA-directed RNA polymerase I subunit rpa49 uncharacterized LOC100263424 DNA-directed RNA polymerase I subunit rpa49 DNA-directed RNA polymerase I subunit rpa49 DNA-directed RNA polymerase I subunit rpa49 uncharacterized LOC101267531 DNA-directed RNA polymerase I subunit rpa49 uncharacterized LOC107787017 uncharacterized LOC107774854 DNA-directed RNA polymerase I subunit rpa49 uncharacterized LOC100284469 DNA-directed RNA polymerase I subunit rpa49 DNA-directed RNA polymerase I subunit rpa49 DNA-directed RNA polymerase I subunit rpa49 uncharacterized LOC8067921 DNA-directed RNA polymerase I subunit rpa49 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 3
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
bra03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 7
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 6
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
gma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 4
mtr03420 Nucleotide excision repair 2
mtr03008 Ribosome biogenesis in eukaryotes 2
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 2
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 3
nta00190 Oxidative phosphorylation 2
nta00195 Photosynthesis 2
nta03018 RNA degradation 2
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 3
nta00190 Oxidative phosphorylation 2
nta00195 Photosynthesis 2
nta03018 RNA degradation 2
nta04081 Hormone signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 5
osa03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
tae03020 RNA polymerase 3
tae00190 Oxidative phosphorylation 2
tae00860 Porphyrin metabolism 2
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 2
bdi03008 Ribosome biogenesis in eukaryotes 2
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03020 RNA polymerase 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106350895 106377555 103842476 820607 107950182 107939764 102616137 100812427 100263424 18094841 11433564 11441148 101267531 102603859 107787017 107774854 4350918 100284469 123092055 123097274 123448414 8067921 100835360 5725760
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