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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.bio   RID3   Transducin/WD40 repeat-like superfamily protein 
 ath-u.5   RID3   Transducin/WD40 repeat-like superfamily protein 
 ath-r.7   RID3   Transducin/WD40 repeat-like superfamily protein 
 ath-m.9   RID3   Transducin/WD40 repeat-like superfamily protein 
 ath-e.2   RID3   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.hor   RID3   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.lig   RID3   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.str   RID3   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.tis   RID3   Transducin/WD40 repeat-like superfamily protein 
 bra-r.6   103875138   protein ROOT INITIATION DEFECTIVE 3 
 bna-r.1   106385029   protein ROOT INITIATION DEFECTIVE 3 
 bna-r.1   106397229   protein ROOT INITIATION DEFECTIVE 3 
 bna-r.1   106447769   protein ROOT INITIATION DEFECTIVE 3-like 
 ghi-r.1   107941566   protein ROOT INITIATION DEFECTIVE 3 
 ghi-r.1   107944611   protein ROOT INITIATION DEFECTIVE 3 
 cit-r.1   102607043   protein ROOT INITIATION DEFECTIVE 3 
 gma-u.5   100791195   protein ROOT INITIATION DEFECTIVE 3 
 gma-u.5   100775776   protein ROOT INITIATION DEFECTIVE 3 
 vvi-u.5   100264347   protein ROOT INITIATION DEFECTIVE 3 
 ppo-u.5   18104875   protein ROOT INITIATION DEFECTIVE 3 
 mtr-u.5   25482697   protein ROOT INITIATION DEFECTIVE 3 
 mtr-u.5   11434801   protein ROOT INITIATION DEFECTIVE 3 
 sly-u.5   101251281   protein ROOT INITIATION DEFECTIVE 3 
 sot-r.1   102593161   protein ROOT INITIATION DEFECTIVE 3 
 nta-r.1   107817903   protein ROOT INITIATION DEFECTIVE 3 
 nta-r.1   107774513   protein ROOT INITIATION DEFECTIVE 3-like 
 osa-u.5   4342993   protein ROOT INITIATION DEFECTIVE 3 
 zma-u.5   100280249   Protein ROOT INITIATION DEFECTIVE 3 
 tae-r.2   123159741   protein ROOT INITIATION DEFECTIVE 3 
 tae-r.2   123148102   protein ROOT INITIATION DEFECTIVE 3 
 tae-r.2   123166236   protein ROOT INITIATION DEFECTIVE 3 
 hvu-r.1   123409101   protein ROOT INITIATION DEFECTIVE 3 
 sbi-r.1   8063613   protein ROOT INITIATION DEFECTIVE 3 
 bdi-r.1   100843279   protein ROOT INITIATION DEFECTIVE 3 
 cre-r.1   CHLRE_06g251350v5   uncharacterized protein 

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Top 50 coexpressed genes to RID3 (ath-m.4.bio coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RID3 (ath-m.4.bio coexpression data)

CoexMap"824079"


athRID3 | Entrez gene ID : 824079      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 3 2 1 2 1 1 2 1 1 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:1902184 [list] [network] negative regulation of shoot apical meristem development  (1 genes)  IMP  
GO CC
GO:0080008 [list] [network] Cul4-RING E3 ubiquitin ligase complex  (121 genes)  ISS  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
Protein NP_190487.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 3  (predict for NP_190487.1)
Subcellular
localization
TargetP
other 8,  chlo 3  (predict for NP_190487.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.bio
for
RID3
ath-u.5
for
RID3
ath-r.7
for
RID3
ath-m.9
for
RID3
ath-e.2
for
RID3
ath-m.4.hor
for
RID3
ath-m.4.lig
for
RID3
ath-m.4.str
for
RID3
ath-m.4.tis
for
RID3
bra-r.6
for
103875138
bna-r.1
for
106385029
bna-r.1
for
106397229
bna-r.1
for
106447769
ghi-r.1
for
107941566
ghi-r.1
for
107944611
cit-r.1
for
102607043
gma-u.5
for
100791195
gma-u.5
for
100775776
vvi-u.5
for
100264347
ppo-u.5
for
18104875
mtr-u.5
for
25482697
mtr-u.5
for
11434801
sly-u.5
for
101251281
sot-r.1
for
102593161
nta-r.1
for
107817903
nta-r.1
for
107774513
osa-u.5
for
4342993
zma-u.5
for
100280249
tae-r.2
for
123159741
tae-r.2
for
123148102
tae-r.2
for
123166236
hvu-r.1
for
123409101
sbi-r.1
for
8063613
bdi-r.1
for
100843279
cre-r.1
for
CHLRE_06g251350v5


Ortholog ID: 8975
Species ath bra bna bna bna ghi ghi cit gma gma vvi ppo mtr mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol RID3 LOC103875138 LOC106385029 LOC106397229 LOC106447769 LOC107941566 LOC107944611 LOC102607043 LOC100791195 LOC100775776 LOC100264347 LOC18104875 LOC25482697 LOC11434801 LOC101251281 LOC102593161 LOC107817903 LOC107774513 LOC4342993 LOC100280249 LOC123159741 LOC123148102 LOC123166236 LOC123409101 LOC8063613 LOC100843279 CHLRE_06g251350v5
Function* Transducin/WD40 repeat-like superfamily protein protein ROOT INITIATION DEFECTIVE 3 protein ROOT INITIATION DEFECTIVE 3 protein ROOT INITIATION DEFECTIVE 3 protein ROOT INITIATION DEFECTIVE 3-like protein ROOT INITIATION DEFECTIVE 3 protein ROOT INITIATION DEFECTIVE 3 protein ROOT INITIATION DEFECTIVE 3 protein ROOT INITIATION DEFECTIVE 3 protein ROOT INITIATION DEFECTIVE 3 protein ROOT INITIATION DEFECTIVE 3 protein ROOT INITIATION DEFECTIVE 3 protein ROOT INITIATION DEFECTIVE 3 protein ROOT INITIATION DEFECTIVE 3 protein ROOT INITIATION DEFECTIVE 3 protein ROOT INITIATION DEFECTIVE 3 protein ROOT INITIATION DEFECTIVE 3 protein ROOT INITIATION DEFECTIVE 3-like protein ROOT INITIATION DEFECTIVE 3 Protein ROOT INITIATION DEFECTIVE 3 protein ROOT INITIATION DEFECTIVE 3 protein ROOT INITIATION DEFECTIVE 3 protein ROOT INITIATION DEFECTIVE 3 protein ROOT INITIATION DEFECTIVE 3 protein ROOT INITIATION DEFECTIVE 3 protein ROOT INITIATION DEFECTIVE 3 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
bra03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04626 Plant-pathogen interaction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00260 Glycine, serine and threonine metabolism 4
bna00460 Cyanoamino acid metabolism 4
bna00630 Glyoxylate and dicarboxylate metabolism 4
bna00670 One carbon pool by folate 4
bna01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04626 Plant-pathogen interaction 4
bna03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 5
vvi00230 Purine metabolism 3
vvi01232 Nucleotide metabolism 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
mtr03013 Nucleocytoplasmic transport 3
mtr03008 Ribosome biogenesis in eukaryotes 2
mtr01240 Biosynthesis of cofactors 2
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 3
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 7
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
nta04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 4
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 7
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 9
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 3
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824079 103875138 106385029 106397229 106447769 107941566 107944611 102607043 100791195 100775776 100264347 18104875 25482697 11434801 101251281 102593161 107817903 107774513 4342993 100280249 123159741 123148102 123166236 123409101 8063613 100843279 5722194
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