ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.bio	AT3G53270	Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein
ath-u.5	AT3G53270	Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein
ath-r.7	AT3G53270	Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein
ath-m.9	AT3G53270	Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein
ath-e.2	AT3G53270	Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein
ath-m.4.hor	AT3G53270	Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein
ath-m.4.lig	AT3G53270	Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein
ath-m.4.str	AT3G53270	Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein
ath-m.4.tis	AT3G53270	Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein
bra-r.6	103829921	uncharacterized LOC103829921
bna-r.1	BNAC06G14520D	uncharacterized BNAC06G14520D
bna-r.1	106356685	uncharacterized LOC106356685
ghi-r.1	121229217	uncharacterized LOC121229217
ghi-r.1	107907537	uncharacterized LOC107907537
cit-r.1	102621221	uncharacterized LOC102621221
cit-r.1	102622940	uncharacterized LOC102622940
gma-u.5	100811149	uncharacterized LOC100811149
vvi-u.5	100262987	uncharacterized LOC100262987
ppo-u.5	18099925	uncharacterized LOC18099925
ppo-u.5	18097717	uncharacterized LOC18097717
mtr-u.5	11436125	uncharacterized LOC11436125
mtr-u.5	25493963	uncharacterized LOC25493963
sly-u.5	101266838	uncharacterized LOC101266838
sot-r.1	107058115	uncharacterized LOC107058115
sot-r.1	102585984	uncharacterized LOC102585984
nta-r.1	107808513	uncharacterized LOC107808513
nta-r.1	107773107	uncharacterized LOC107773107
nta-r.1	107773028	uncharacterized LOC107773028
osa-u.5	4348989	uncharacterized LOC4348989
zma-u.5	109943460	uncharacterized LOC109943460
zma-u.5	103640534	BTB/POZ domain-containing protein
zma-u.5	100273144	uncharacterized LOC100273144
tae-r.2	123110528	uncharacterized LOC123110528
tae-r.2	123106595	uncharacterized LOC123106595
tae-r.2	123119526	uncharacterized LOC123119526
hvu-r.1	123396274	uncharacterized LOC123396274
sbi-r.1	8076625	uncharacterized LOC8076625
sbi-r.1	8069738	uncharacterized LOC8069738
bdi-r.1	100821251	uncharacterized LOC100821251
cre-r.1	CHLRE_06g279183v5	uncharacterized protein

Top 50 coexpressed genes to AT3G53270 (ath-m.4.bio coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT3G53270 (ath-m.4.bio coexpression data)

CoexMap""

[Cytoscape]

Annotation

functional annotation

Function

Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

Protein

NP_001078276.1 [sequence] [blastp]
NP_001190076.1 [sequence] [blastp]
NP_001326729.1 [sequence] [blastp]
NP_001326730.1 [sequence] [blastp]
NP_001326731.1 [sequence] [blastp]
NP_566983.1 [sequence] [blastp]
NP_850689.1 [sequence] [blastp]
NP_850690.1 [sequence] [blastp]
NP_974422.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, cyto 4, mito 1, plas 1, mito_plas 1	(predict for NP_001078276.1)
cyto 5, chlo 4, mito 1, plas 1, mito_plas 1	(predict for NP_001190076.1)
chlo 4, cyto 4, mito 1, plas 1, mito_plas 1	(predict for NP_001326729.1)
chlo 4, cyto 4, mito 1, plas 1, mito_plas 1	(predict for NP_001326730.1)
chlo 4, cyto 4, mito 1, plas 1, mito_plas 1	(predict for NP_001326731.1)
chlo 4, cyto 4, mito 1, plas 1, mito_plas 1	(predict for NP_566983.1)
chlo 4, cyto 4, mito 1, plas 1, mito_plas 1	(predict for NP_850689.1)
chlo 4, cyto 4, mito 1, plas 1, mito_plas 1	(predict for NP_850690.1)
chlo 4, cyto 4, mito 1, plas 1, mito_plas 1	(predict for NP_974422.1)

Subcellular
localization
TargetP

other 9	(predict for NP_001078276.1)
other 9	(predict for NP_001190076.1)
other 9	(predict for NP_001326729.1)
other 9	(predict for NP_001326730.1)
other 9	(predict for NP_001326731.1)
other 9	(predict for NP_566983.1)
other 9	(predict for NP_850689.1)
other 9	(predict for NP_850690.1)
other 9	(predict for NP_974422.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.bio for AT3G53270	ath-u.5 for AT3G53270	ath-r.7 for AT3G53270	ath-m.9 for AT3G53270	ath-e.2 for AT3G53270	ath-m.4.hor for AT3G53270	ath-m.4.lig for AT3G53270	ath-m.4.str for AT3G53270	ath-m.4.tis for AT3G53270	bra-r.6 for 103829921	bna-r.1 for BNAC06G14520D	bna-r.1 for 106356685	ghi-r.1 for 121229217	ghi-r.1 for 107907537	cit-r.1 for 102621221	cit-r.1 for 102622940	gma-u.5 for 100811149	vvi-u.5 for 100262987	ppo-u.5 for 18099925	ppo-u.5 for 18097717	mtr-u.5 for 11436125	mtr-u.5 for 25493963	sly-u.5 for 101266838	sot-r.1 for 107058115	sot-r.1 for 102585984	nta-r.1 for 107808513	nta-r.1 for 107773107	nta-r.1 for 107773028	osa-u.5 for 4348989	zma-u.5 for 109943460	zma-u.5 for 103640534	zma-u.5 for 100273144	tae-r.2 for 123110528	tae-r.2 for 123106595	tae-r.2 for 123119526	hvu-r.1 for 123396274	sbi-r.1 for 8076625	sbi-r.1 for 8069738	bdi-r.1 for 100821251	cre-r.1 for CHLRE_06g279183v5

Please wait a moment.

Ortholog

Ortholog ID: 6582

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein

uncharacterized LOC103829921

uncharacterized BNAC06G14520D

uncharacterized LOC106356685

uncharacterized LOC121229217

uncharacterized LOC107907537

uncharacterized LOC102621221

uncharacterized LOC102622940

uncharacterized LOC100811149

uncharacterized LOC100262987

uncharacterized LOC18099925

uncharacterized LOC18097717

uncharacterized LOC11436125

uncharacterized LOC25493963

uncharacterized LOC101266838

uncharacterized LOC107058115

uncharacterized LOC102585984

uncharacterized LOC107808513

uncharacterized LOC107773107

uncharacterized LOC107773028

uncharacterized LOC4348989

uncharacterized LOC109943460

BTB/POZ domain-containing protein

uncharacterized LOC100273144

uncharacterized LOC123110528

uncharacterized LOC123106595

uncharacterized LOC123119526

uncharacterized LOC123396274

uncharacterized LOC8076625

uncharacterized LOC8069738

uncharacterized LOC100821251

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	2
ath04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	4
bra03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00061	Fatty acid biosynthesis	2
bna00062	Fatty acid elongation	2
bna01212	Fatty acid metabolism	2
bna00540	Lipopolysaccharide biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04626	Plant-pathogen interaction	2
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00514	Other types of O-glycan biosynthesis	2
ppo03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03022	Basal transcription factors	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03022	Basal transcription factors	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03022	Basal transcription factors	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	3
tae03410	Base excision repair	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03410	Base excision repair	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	2

Expression

Expression pattern

Entrez Gene ID^*

824494

103829921

106452447

106356685

121229217

107907537

102621221

102622940

100811149

100262987

18099925

18097717

11436125

25493963

101266838

107058115

102585984

107808513

107773107

107773028

4348989

109943460

103640534

100273144

123110528

123106595

123119526

123396274

8076625

8069738

100821251

5720876

The preparation time of this page was 0.2 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	9	1	2	2	2	1	1	2	2	1	2	3	1	3	3	1	2	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT3G53270 (ath-m.4.bio coexpression data)

Top 50 enrichment test to AT3G53270 (ath-m.4.bio coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**