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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.bio   PMD1   Tropomyosin-like protein 
 ath-u.5   PMD1   Tropomyosin-like protein 
 ath-r.7   PMD1   Tropomyosin-like protein 
 ath-m.9   PMD1   Tropomyosin-like protein 
 ath-e.2   PMD1   Tropomyosin-like protein 
 ath-m.4.hor   PMD1   Tropomyosin-like protein 
 ath-m.4.lig   PMD1   Tropomyosin-like protein 
 ath-m.4.str   PMD1   Tropomyosin-like protein 
 ath-m.4.tis   PMD1   Tropomyosin-like protein 
 ath-u.5   AT2G42865   uncharacterized protein 
 bra-r.6   103830187   peroxisomal and mitochondrial division factor 1 
 bra-r.6   103844030   peroxisomal and mitochondrial division factor 2 
 bra-r.6   103866656   peroxisomal and mitochondrial division factor 1 
 bna-r.1   106427055   peroxisomal and mitochondrial division factor 2 
 bna-r.1   106399737   peroxisomal and mitochondrial division factor 2 
 ghi-r.1   107945734   peroxisomal and mitochondrial division factor 2 
 cit-r.1   102625554   peroxisomal and mitochondrial division factor 2-like 
 gma-u.5   100814031   peroxisomal and mitochondrial division factor 2 
 gma-u.5   100781661   peroxisomal and mitochondrial division factor 2 
 vvi-u.5   100247157   peroxisomal and mitochondrial division factor 2 
 ppo-u.5   7468741   peroxisomal and mitochondrial division factor 2 
 ppo-u.5   7464798   peroxisomal and mitochondrial division factor 2 
 mtr-u.5   11429969   peroxisomal and mitochondrial division factor 2 

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Top 50 coexpressed genes to PMD1 (ath-m.4.bio coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PMD1 (ath-m.4.bio coexpression data)

CoexMap"825053"


athPMD1 | Entrez gene ID : 825053    
Species ath bra bna ghi cit gma vvi ppo mtr sbi osa sot sly tae hvu zma cre nta bdi
Paralog 10 3 2 1 1 2 1 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0007031 [list] [network] peroxisome organization  (31 genes)  IMP  
GO:0007005 [list] [network] mitochondrion organization  (60 genes)  IMP  
GO CC
GO:0005778 [list] [network] peroxisomal membrane  (16 genes)  IDA  
GO:0031966 [list] [network] mitochondrial membrane  (105 genes)  IDA  
GO:0005777 [list] [network] peroxisome  (313 genes)  IDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  HDA IDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0042803 [list] [network] protein homodimerization activity  (237 genes)  IPI  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001078312.1 [sequence] [blastp]
NP_191443.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  nucl 1,  mito 1,  chlo 1,  plas 1,  vacu 1,  E.R. 1,  golg 1,  cyto_mito 1,  cysk_nucl 1,  golg_plas 1,  E.R._vacu 1,  E.R._plas 1  (predict for NP_001078312.1)
cyto 4,  nucl 1,  mito 1,  chlo 1,  plas 1,  vacu 1,  E.R. 1,  golg 1,  cyto_mito 1,  cysk_nucl 1,  golg_plas 1,  E.R._vacu 1,  E.R._plas 1  (predict for NP_191443.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001078312.1)
other 9  (predict for NP_191443.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.bio
for
PMD1
ath-u.5
for
PMD1
ath-r.7
for
PMD1
ath-m.9
for
PMD1
ath-e.2
for
PMD1
ath-m.4.hor
for
PMD1
ath-m.4.lig
for
PMD1
ath-m.4.str
for
PMD1
ath-m.4.tis
for
PMD1
ath-u.5
for
AT2G42865
bra-r.6
for
103830187
bra-r.6
for
103844030
bra-r.6
for
103866656
bna-r.1
for
106427055
bna-r.1
for
106399737
ghi-r.1
for
107945734
cit-r.1
for
102625554
gma-u.5
for
100814031
gma-u.5
for
100781661
vvi-u.5
for
100247157
ppo-u.5
for
7468741
ppo-u.5
for
7464798
mtr-u.5
for
11429969


Ortholog ID: 10161
Species ath ath bra bra bra bna bna bna ghi ghi cit gma gma vvi ppo ppo mtr
Symbol PMD1 AT2G42865 LOC103830187 LOC103844030 LOC103866656 LOC106427055 LOC106391945 LOC125600659 LOC107945734 LOC107960930 LOC102625554 LOC100814031 LOC100781661 LOC100247157 LOC7468741 LOC7464798 LOC11429969
Function* Tropomyosin-like protein uncharacterized protein peroxisomal and mitochondrial division factor 1 peroxisomal and mitochondrial division factor 2 peroxisomal and mitochondrial division factor 1 peroxisomal and mitochondrial division factor 2 peroxisomal and mitochondrial division factor 1-like peroxisomal and mitochondrial division factor 2-like peroxisomal and mitochondrial division factor 2 peroxisomal and mitochondrial division factor 1 peroxisomal and mitochondrial division factor 2-like peroxisomal and mitochondrial division factor 2 peroxisomal and mitochondrial division factor 2 peroxisomal and mitochondrial division factor 2 peroxisomal and mitochondrial division factor 2 peroxisomal and mitochondrial division factor 2 peroxisomal and mitochondrial division factor 2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 3
bna03082 ATP-dependent chromatin remodeling 3
bna03410 Base excision repair 3
bna03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 4
bna03015 mRNA surveillance pathway 4
bna03040 Spliceosome 4
bna03030 DNA replication 3
bna03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 3
bna03082 ATP-dependent chromatin remodeling 3
bna03410 Base excision repair 3
bna03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03250 Viral life cycle - HIV-1 6
ghi03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
gma03250 Viral life cycle - HIV-1 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 7
gma03015 mRNA surveillance pathway 5
gma03250 Viral life cycle - HIV-1 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 3
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 2
mtr03015 mRNA surveillance pathway 2
mtr03250 Viral life cycle - HIV-1 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 825053 28718351 103830187 103844030 103866656 106427055 106391945 125600659 107945734 107960930 102625554 100814031 100781661 100247157 7468741 7464798 11429969
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