ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.bio	AT5G08200	peptidoglycan-binding LysM domain-containing protein
ath-u.5	AT5G08200	peptidoglycan-binding LysM domain-containing protein
ath-r.7	AT5G08200	peptidoglycan-binding LysM domain-containing protein
ath-m.9	AT5G08200	peptidoglycan-binding LysM domain-containing protein
ath-e.2	AT5G08200	peptidoglycan-binding LysM domain-containing protein
ath-m.4.hor	AT5G08200	peptidoglycan-binding LysM domain-containing protein
ath-m.4.lig	AT5G08200	peptidoglycan-binding LysM domain-containing protein
ath-m.4.str	AT5G08200	peptidoglycan-binding LysM domain-containing protein
ath-m.4.tis	AT5G08200	peptidoglycan-binding LysM domain-containing protein
ath-u.5	AT5G23130	Peptidoglycan-binding LysM domain-containing protein
bra-r.6	103847138	uncharacterized LOC103847138
bra-r.6	103850688	uncharacterized LOC103850688
bna-r.1	BNAC07G49750D	uncharacterized BNAC07G49750D
bna-r.1	BNAC09G47710D	uncharacterized BNAC09G47710D
bna-r.1	106384980	uncharacterized LOC106384980
ghi-r.1	107920716	uncharacterized LOC107920716
ghi-r.1	121210935	uncharacterized LOC121210935
cit-r.1	102609373	uncharacterized LOC102609373
cit-r.1	102631269	uncharacterized LOC102631269
gma-u.5	100816543	uncharacterized LOC100816543
gma-u.5	100786430	peptidoglycan-binding LysM domain-containing protein
vvi-u.5	100250730	uncharacterized LOC100250730
vvi-u.5	100266699	uncharacterized LOC100266699
ppo-u.5	7485197	uncharacterized LOC7485197
ppo-u.5	7492078	uncharacterized LOC7492078
ppo-u.5	7456314	uncharacterized LOC7456314
mtr-u.5	11427858	uncharacterized LOC11427858
mtr-u.5	25482819	uncharacterized LOC25482819
sly-u.5	101258614	uncharacterized LOC101258614
sly-u.5	101259006	uncharacterized LOC101259006
sot-r.1	102589961	uncharacterized LOC102589961
sot-r.1	102605213	uncharacterized LOC102605213
sot-r.1	102602521	uncharacterized LOC102602521
nta-r.1	107767163	uncharacterized LOC107767163
nta-r.1	107796282	uncharacterized LOC107796282
nta-r.1	107816652	uncharacterized LOC107816652
osa-u.5	4348943	uncharacterized LOC4348943
osa-u.5	9267060	uncharacterized LOC9267060
zma-u.5	100279352	lysM domain containing protein
zma-u.5	103630688	peptidoglycan-binding LysM domain-containing protein
tae-r.2	123167920	uncharacterized LOC123167920
tae-r.2	123106171	uncharacterized LOC123106171
tae-r.2	123161589	uncharacterized LOC123161589
hvu-r.1	123431717	uncharacterized LOC123431717
hvu-r.1	123409309	uncharacterized LOC123409309
hvu-r.1	123450044	uncharacterized LOC123450044
sbi-r.1	8067130	uncharacterized LOC8067130
sbi-r.1	8066391	uncharacterized LOC8066391
sbi-r.1	8059500	uncharacterized LOC8059500
bdi-r.1	100832309	lysM and putative peptidoglycan-binding domain-containing protein 1
bdi-r.1	100829464	uncharacterized LOC100829464
bdi-r.1	100823186	uncharacterized LOC100823186
cre-r.1	CHLRE_07g339600v5	uncharacterized protein

Top 50 coexpressed genes to AT5G08200 (ath-m.4.bio coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT5G08200 (ath-m.4.bio coexpression data)

CoexMap"830716"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

Protein

NP_196437.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 8, cyto 1, extr 1, pero 1, cyto_pero 1

(predict for NP_196437.2)

Subcellular
localization
TargetP

other 6, mito 3

(predict for NP_196437.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.bio for AT5G08200	ath-u.5 for AT5G08200	ath-r.7 for AT5G08200	ath-m.9 for AT5G08200	ath-e.2 for AT5G08200	ath-m.4.hor for AT5G08200	ath-m.4.lig for AT5G08200	ath-m.4.str for AT5G08200	ath-m.4.tis for AT5G08200	ath-u.5 for AT5G23130	bra-r.6 for 103847138	bra-r.6 for 103850688	bna-r.1 for BNAC07G49750D	bna-r.1 for BNAC09G47710D	bna-r.1 for 106384980	ghi-r.1 for 107920716	ghi-r.1 for 121210935	cit-r.1 for 102609373	cit-r.1 for 102631269	gma-u.5 for 100816543	gma-u.5 for 100786430	vvi-u.5 for 100250730	vvi-u.5 for 100266699	ppo-u.5 for 7485197	ppo-u.5 for 7492078	ppo-u.5 for 7456314	mtr-u.5 for 11427858	mtr-u.5 for 25482819	sly-u.5 for 101258614	sly-u.5 for 101259006	sot-r.1 for 102589961	sot-r.1 for 102605213	sot-r.1 for 102602521	nta-r.1 for 107767163	nta-r.1 for 107796282	nta-r.1 for 107816652	osa-u.5 for 4348943	osa-u.5 for 9267060	zma-u.5 for 100279352	zma-u.5 for 103630688	tae-r.2 for 123167920	tae-r.2 for 123106171	tae-r.2 for 123161589	hvu-r.1 for 123431717	hvu-r.1 for 123409309	hvu-r.1 for 123450044	sbi-r.1 for 8067130	sbi-r.1 for 8066391	sbi-r.1 for 8059500	bdi-r.1 for 100832309	bdi-r.1 for 100829464	bdi-r.1 for 100823186	cre-r.1 for CHLRE_07g339600v5

Ortholog

Ortholog ID: 1814

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

peptidoglycan-binding LysM domain-containing protein

Peptidoglycan-binding LysM domain-containing protein

uncharacterized LOC103850688

uncharacterized LOC103855766

uncharacterized BNAC07G49750D

uncharacterized LOC106384980

uncharacterized LOC106419488

uncharacterized LOC107894038

uncharacterized LOC102609373

uncharacterized LOC102631269

uncharacterized LOC100816543

uncharacterized LOC100780383

uncharacterized LOC100250730

uncharacterized LOC100266699

uncharacterized LOC7485197

uncharacterized LOC7492078

uncharacterized LOC7456314

uncharacterized LOC11427858

uncharacterized LOC25482819

uncharacterized LOC101258614

uncharacterized LOC101259006

uncharacterized LOC102589961

uncharacterized LOC102605213

uncharacterized LOC102602521

uncharacterized LOC107767163

uncharacterized LOC107796282

uncharacterized LOC107798601

uncharacterized LOC4348943

uncharacterized LOC9267060

lysM domain containing protein

peptidoglycan-binding LysM domain-containing protein

lysM domain containing protein

uncharacterized LOC123149872

uncharacterized LOC123046439

uncharacterized LOC123094023

uncharacterized LOC123431717

uncharacterized LOC123409309

uncharacterized LOC123450044

uncharacterized LOC8067130

uncharacterized LOC8066391

uncharacterized LOC8059500

lysM and putative peptidoglycan-binding domain-containing protein 1

uncharacterized LOC100829464

uncharacterized LOC100823186

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04144	Endocytosis	5
bra05100	Bacterial invasion of epithelial cells	3
bra04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04130	SNARE interactions in vesicular transport	4
ghi00510	N-Glycan biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	2
cit00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	2
sly03083	Polycomb repressive complex	2
sly04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00510	N-Glycan biosynthesis	2
sot04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00562	Inositol phosphate metabolism	2
nta04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00562	Inositol phosphate metabolism	2
nta04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00240	Pyrimidine metabolism	2
osa01232	Nucleotide metabolism	2
osa01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00330	Arginine and proline metabolism	2
zma00410	beta-Alanine metabolism	2
zma00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04016	MAPK signaling pathway - plant	3
tae00280	Valine, leucine and isoleucine degradation	3
tae00650	Butanoate metabolism	3
tae04146	Peroxisome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04130	SNARE interactions in vesicular transport	3
tae03015	mRNA surveillance pathway	2
tae04136	Autophagy - other	2
tae04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04081	Hormone signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	2
hvu04142	Lysosome	2
hvu04144	Endocytosis	2
hvu00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04016	MAPK signaling pathway - plant	2
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04626	Plant-pathogen interaction	3
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	3
sbi04626	Plant-pathogen interaction	3
sbi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00240	Pyrimidine metabolism	2
bdi01232	Nucleotide metabolism	2
bdi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00010	Glycolysis / Gluconeogenesis	8
bdi01200	Carbon metabolism	7
bdi01230	Biosynthesis of amino acids	7
bdi00710	Carbon fixation by Calvin cycle	4
bdi00620	Pyruvate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04130	SNARE interactions in vesicular transport	2

Expression

Expression pattern

Entrez Gene ID^*

830716

832377

103850688

103855766

106377289

106384980

106419488

107894038

102609373

102631269

100816543

100780383

100250730

100266699

7485197

7492078

7456314

11427858

25482819

101258614

101259006

102589961

102605213

102602521

107767163

107796282

107798601

4348943

9267060

100279352

103639613

100283704

123149872

123046439

123094023

123431717

123409309

123450044

8067130

8066391

8059500

100832309

100829464

100823186

5717973

The preparation time of this page was 0.2 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	10	2	3	2	2	2	2	3	2	2	3	3	2	2	3	3	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT5G08200 (ath-m.4.bio coexpression data)

Top 50 enrichment test to AT5G08200 (ath-m.4.bio coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**