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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.bio   HD2C   histone deacetylase 2C 
 ath-u.5   HD2C   histone deacetylase 2C 
 ath-r.7   HD2C   histone deacetylase 2C 
 ath-m.9   HD2C   histone deacetylase 2C 
 ath-e.2   HD2C   histone deacetylase 2C 
 ath-m.4.hor   HD2C   histone deacetylase 2C 
 ath-m.4.lig   HD2C   histone deacetylase 2C 
 ath-m.4.str   HD2C   histone deacetylase 2C 
 ath-m.4.tis   HD2C   histone deacetylase 2C 
 ath-u.5   HD2B   histone deacetylase 2B 
 ath-u.5   HDA3   histone deacetylase 3 
 bra-r.6   103851458   histone deacetylase HDT2 
 bra-r.6   103856522   histone deacetylase HDT2 
 bra-r.6   103845525   histone deacetylase HDT2 
 bna-r.1   106443312   histone deacetylase HDT2-like 
 bna-r.1   125583208   histone deacetylase HDT2-like 
 bna-r.1   106433856   histone deacetylase HDT3-like 
 ghi-r.1   107891646   histone deacetylase HDT1 
 ghi-r.1   107905356   histone deacetylase HDT3 
 ghi-r.1   107906652   histone deacetylase HDT1 
 cit-r.1   102615049   histone deacetylase HDT1 
 cit-r.1   102618548   histone deacetylase HDT1-like 
 gma-u.5   HDT2   histone deacetylase HDT1-like 
 gma-u.5   HDT4   histone deacetylase HDT1-like 
 gma-u.5   100792094   uncharacterized LOC100792094 
 vvi-u.5   100256817   histone deacetylase HDT1 
 vvi-u.5   100252840   histone deacetylase HDT1 
 ppo-u.5   18097993   histone deacetylase HDT1 
 ppo-u.5   7474933   histone deacetylase HDT1 
 ppo-u.5   18100075   histone deacetylase HDT1 
 mtr-u.5   112416804   histone deacetylase HDT1 
 mtr-u.5   25487509   histone deacetylase HDT1 
 mtr-u.5   11434564   histone deacetylase HDT1 
 sly-u.5   101244607   histone deacetylase HDT1 
 sly-u.5   101262270   histone deacetylase HDT1 
 sot-r.1   102595604   histone deacetylase HDT1 
 sot-r.1   102595265   histone deacetylase HDT1 
 nta-r.1   107776644   histone deacetylase HDT1-like 
 nta-r.1   107782996   histone deacetylase HDT1-like 
 nta-r.1   107792079   histone deacetylase HDT1-like 
 osa-u.5   4339823   histone deacetylase HDT2 
 zma-u.5   542355   histone deacetylase103 
 zma-u.5   542636   histone deacetylase102 
 zma-u.5   103636709   histone deacetylase HDT1-like 
 tae-r.2   780626   histone deacetylase HDT2 
 tae-r.2   123161746   histone deacetylase HDT2-like 
 hvu-r.1   123452961   histone deacetylase HDT2-like 
 sbi-r.1   8068982   histone deacetylase HDT2 
 sbi-r.1   8078710   histone deacetylase HDT3 
 sbi-r.1   8066575   histone deacetylase HDT2 
 bdi-r.1   100835633   histone deacetylase HDT2 
 bdi-r.1   100837781   histone deacetylase HDT2 

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Top 50 coexpressed genes to HD2C (ath-m.4.bio coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to HD2C (ath-m.4.bio coexpression data)

CoexMap"831733"


athHD2C | Entrez gene ID : 831733      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 11 3 3 3 2 3 2 3 3 2 2 3 1 3 2 1 3 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045892 [list] [network] negative regulation of DNA-templated transcription  (200 genes)  IDA  
GO:0009414 [list] [network] response to water deprivation  (426 genes)  IMP  
GO:0009409 [list] [network] response to cold  (436 genes)  IEP  
GO:0009651 [list] [network] response to salt stress  (473 genes)  IMP  
GO:0009737 [list] [network] response to abscisic acid  (550 genes)  IEP  
GO CC
GO:0005730 [list] [network] nucleolus  (394 genes)  HDA IDA  
GO:0005886 [list] [network] plasma membrane  (2598 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0004407 [list] [network] histone deacetylase activity  (17 genes)  ISS  
GO:0000976 [list] [network] transcription cis-regulatory region binding  (716 genes)  IPI  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_195994.3 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_195994.3)
Subcellular
localization
TargetP
other 8  (predict for NP_195994.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.bio
for
HD2C
ath-u.5
for
HD2C
ath-r.7
for
HD2C
ath-m.9
for
HD2C
ath-e.2
for
HD2C
ath-m.4.hor
for
HD2C
ath-m.4.lig
for
HD2C
ath-m.4.str
for
HD2C
ath-m.4.tis
for
HD2C
ath-u.5
for
HD2B
ath-u.5
for
HDA3
bra-r.6
for
103851458
bra-r.6
for
103856522
bra-r.6
for
103845525
bna-r.1
for
106443312
bna-r.1
for
125583208
bna-r.1
for
106433856
ghi-r.1
for
107891646
ghi-r.1
for
107905356
ghi-r.1
for
107906652
cit-r.1
for
102615049
cit-r.1
for
102618548
gma-u.5
for
HDT2
gma-u.5
for
HDT4
gma-u.5
for
100792094
vvi-u.5
for
100256817
vvi-u.5
for
100252840
ppo-u.5
for
18097993
ppo-u.5
for
7474933
ppo-u.5
for
18100075
mtr-u.5
for
112416804
mtr-u.5
for
25487509
mtr-u.5
for
11434564
sly-u.5
for
101244607
sly-u.5
for
101262270
sot-r.1
for
102595604
sot-r.1
for
102595265
nta-r.1
for
107776644
nta-r.1
for
107782996
nta-r.1
for
107792079
osa-u.5
for
4339823
zma-u.5
for
542355
zma-u.5
for
542636
zma-u.5
for
103636709
tae-r.2
for
780626
tae-r.2
for
123161746
hvu-r.1
for
123452961
sbi-r.1
for
8068982
sbi-r.1
for
8078710
sbi-r.1
for
8066575
bdi-r.1
for
100835633
bdi-r.1
for
100837781


Ortholog ID: 1463
Species ath ath ath bra bra bna bna ghi ghi ghi cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr mtr sly sly sot sot nta nta nta osa zma zma zma tae tae tae hvu sbi sbi sbi bdi bdi
Symbol HD2C HD2B HDA3 LOC103856522 LOC103845525 LOC106443312 LOC106372652 LOC107905356 LOC107912781 LOC107955725 LOC102615049 LOC102618548 HDT4 LOC100792094 HD2A LOC100256817 LOC100252840 LOC18097993 LOC7474933 LOC18100075 LOC112416804 LOC11434564 LOC11434112 LOC101244607 LOC101262270 LOC102595604 LOC102595265 LOC107776644 LOC107782996 LOC107798125 LOC4339823 LOC542355 LOC103636373 LOC103636374 LOC780626 LOC123050863 LOC123183440 LOC123452961 LOC8068982 LOC8078710 LOC8066575 LOC100835633 LOC100837781
Function* histone deacetylase 2C histone deacetylase 2B histone deacetylase 3 histone deacetylase HDT2 histone deacetylase HDT2 histone deacetylase HDT2-like histone deacetylase HDT3 histone deacetylase HDT3 histone deacetylase HDT1 histone deacetylase HDT1 histone deacetylase HDT1 histone deacetylase HDT1-like histone deacetylase HDT1-like uncharacterized LOC100792094 histone deacetylase HDT1 histone deacetylase HDT1 histone deacetylase HDT1 histone deacetylase HDT1 histone deacetylase HDT1 histone deacetylase HDT1 histone deacetylase HDT1 histone deacetylase HDT1 histone deacetylase HDT1 histone deacetylase HDT1 histone deacetylase HDT1 histone deacetylase HDT1 histone deacetylase HDT1 histone deacetylase HDT1-like histone deacetylase HDT1-like histone deacetylase HDT1-like histone deacetylase HDT2 histone deacetylase103 histone deacetylase HDT3-like histone deacetylase HDT1-like histone deacetylase HDT2 histone deacetylase HDT2 histone deacetylase HDT2 histone deacetylase HDT2-like histone deacetylase HDT2 histone deacetylase HDT3 histone deacetylase HDT2 histone deacetylase HDT2 histone deacetylase HDT2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 8
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 6
ath03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 6
bra03040 Spliceosome 2
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00904 Diterpenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
bna00540 Lipopolysaccharide biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 4
ghi03420 Nucleotide excision repair 4
ghi03040 Spliceosome 2
ghi04075 Plant hormone signal transduction 2
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi00240 Pyrimidine metabolism 2
ghi00250 Alanine, aspartate and glutamate metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
gma03018 RNA degradation 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 4
gma03008 Ribosome biogenesis in eukaryotes 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 17
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03020 RNA polymerase 3
ppo03420 Nucleotide excision repair 3
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 7
mtr03018 RNA degradation 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 10
mtr00270 Cysteine and methionine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 8
sly03010 Ribosome 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 5
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
sot03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 6
osa03010 Ribosome 5
osa00270 Cysteine and methionine metabolism 2
osa00450 Selenocompound metabolism 2
osa01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 8
tae03010 Ribosome 7
tae03013 Nucleocytoplasmic transport 2
tae03015 mRNA surveillance pathway 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae03013 Nucleocytoplasmic transport 2
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 2
sbi03015 mRNA surveillance pathway 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 6
sbi03018 RNA degradation 2
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 4
sbi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
bdi03030 DNA replication 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831733 832328 823605 103856522 103845525 106443312 106372652 107905356 107912781 107955725 102615049 102618548 100795506 100792094 547649 100256817 100252840 18097993 7474933 18100075 112416804 11434564 11434112 101244607 101262270 102595604 102595265 107776644 107782996 107798125 4339823 542355 103636373 103636374 780626 123050863 123183440 123452961 8068982 8078710 8066575 100835633 100837781
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