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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.bio   CUC2   NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 
 ath-m.9   CUC2   NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 
 ath-m.4.hor   CUC2   NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 
 ath-m.4.lig   CUC2   NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 
 ath-m.4.str   CUC2   NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 
 ath-m.4.tis   CUC2   NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 
 bra-r.6   103859613   protein CUP-SHAPED COTYLEDON 1 
 ghi-r.1   107917066   protein CUP-SHAPED COTYLEDON 2 
 ghi-r.1   107895256   protein CUP-SHAPED COTYLEDON 2 
 ghi-r.1   121204753   protein CUP-SHAPED COTYLEDON 2 
 gma-u.5   100805987   protein CUP-SHAPED COTYLEDON 2 
 sly-u.5   NAM   NO APICAL MERISTEM 
 sot-r.1   NAM   NO APICAL MERISTEM 
 nta-r.1   107800137   protein CUP-SHAPED COTYLEDON 2-like 
 nta-r.1   107826703   protein CUP-SHAPED COTYLEDON 2-like 
 osa-u.5   4340969   protein CUP-SHAPED COTYLEDON 1 
 zma-u.5   103629107   uncharacterized LOC103629107 
 zma-u.5   606437   protein CUP-SHAPED COTYLEDON 1 
 sbi-r.1   8082811   protein CUP-SHAPED COTYLEDON 1 

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Top 50 coexpressed genes to CUC2 (ath-m.4.bio coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CUC2 (ath-m.4.bio coexpression data)

CoexMap"835478"


athCUC2 | Entrez gene ID : 835478      
Species ath bra ghi gma sly sot nta osa zma sbi cre ppo mtr tae cit bdi hvu vvi bna
Paralog 6 1 3 1 1 1 2 1 2 1 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0090709 [list] [network] regulation of timing of plant organ formation  (1 genes)  IMP  
GO:0010072 [list] [network] primary shoot apical meristem specification  (15 genes)  IGI  
GO:0090691 [list] [network] formation of plant organ boundary  (16 genes)  IGI  
GO:0010223 [list] [network] secondary shoot formation  (25 genes)  IMP  
GO:0048366 [list] [network] leaf development  (371 genes)  IMP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0000976 [list] [network] transcription cis-regulatory region binding  (716 genes)  IPI  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IDA IPI  
Protein NP_200206.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_200206.1)
Subcellular
localization
TargetP
other 9  (predict for NP_200206.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.bio
for
CUC2
ath-m.9
for
CUC2
ath-m.4.hor
for
CUC2
ath-m.4.lig
for
CUC2
ath-m.4.str
for
CUC2
ath-m.4.tis
for
CUC2
bra-r.6
for
103859613
ghi-r.1
for
107917066
ghi-r.1
for
107895256
ghi-r.1
for
121204753
gma-u.5
for
100805987
sly-u.5
for
NAM
sot-r.1
for
NAM
nta-r.1
for
107800137
nta-r.1
for
107826703
osa-u.5
for
4340969
zma-u.5
for
103629107
zma-u.5
for
606437
sbi-r.1
for
8082811


Ortholog ID: 4077
Species bra ghi ghi ghi gma sly sot nta nta osa zma zma sbi
Symbol LOC103859613 LOC107917066 LOC121204753 LOC107918931 LOC100805987 NAM NAM LOC107800137 LOC107826703 LOC4340969 LOC103629107 LOC606437 LOC8082811
Function* protein CUP-SHAPED COTYLEDON 1 protein CUP-SHAPED COTYLEDON 2 protein CUP-SHAPED COTYLEDON 2 protein CUP-SHAPED COTYLEDON 2-like protein CUP-SHAPED COTYLEDON 2 NO APICAL MERISTEM NO APICAL MERISTEM protein CUP-SHAPED COTYLEDON 2-like protein CUP-SHAPED COTYLEDON 2-like protein CUP-SHAPED COTYLEDON 1 uncharacterized LOC103629107 protein CUP-SHAPED COTYLEDON 1 protein CUP-SHAPED COTYLEDON 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00061 Fatty acid biosynthesis 2
gma00071 Fatty acid degradation 2
gma01212 Fatty acid metabolism 2
gma04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00280 Valine, leucine and isoleucine degradation 2
sbi00410 beta-Alanine metabolism 2
sbi00640 Propanoate metabolism 2
sbi01200 Carbon metabolism 2
sbi04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103859613 107917066 121204753 107918931 100805987 100301934 102577609 107800137 107826703 4340969 103629107 606437 8082811
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