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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   606437   protein CUP-SHAPED COTYLEDON 1 
 zma-r.6   606437   protein CUP-SHAPED COTYLEDON 1 
 zma-u.5   103629107   uncharacterized LOC103629107 
 osa-u.5   4340969   protein CUP-SHAPED COTYLEDON 1 
 gma-u.5   100805987   protein CUP-SHAPED COTYLEDON 2 
 sly-u.5   NAM   NO APICAL MERISTEM 

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Top 50 coexpressed genes to 606437 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 606437 (zma-u.5 coexpression data)

CoexMap"606437"


zmaLOC606437 | Entrez gene ID : 606437      
Species zma osa gma sly sbi nta mtr cre bra cit vvi ppo hvu bdi sot tae ath bna ghi
Paralog 3 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1994 genes)  IEA  
GO CC
GO MF
GO:0003677 [list] [network] DNA binding  (2288 genes)  IEA  
Protein XP_008674409.1 [sequence] [blastp]
XP_008674410.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 3,  chlo 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_008674409.1)
cyto 5,  nucl 3,  chlo 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_008674410.1)
Subcellular
localization
TargetP
other 9,  mito 3  (predict for XP_008674409.1)
other 9,  mito 3  (predict for XP_008674410.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
606437

.
zma-r.6
for
606437

.
zma-u.5
for
103629107

.
osa-u.5
for
4340969

.
gma-u.5
for
100805987

.
sly-u.5
for
NAM

.


Ortholog ID: 4077
Species gma sly osa zma zma bra ghi ghi sbi sot nta nta
Symbol LOC100805987 NAM LOC4340969 LOC103629107 LOC606437 LOC103859613 LOC107917066 LOC121204753 LOC8082811 NAM LOC107826703 LOC107800137
Function* protein CUP-SHAPED COTYLEDON 2 NO APICAL MERISTEM protein CUP-SHAPED COTYLEDON 1 uncharacterized LOC103629107 protein CUP-SHAPED COTYLEDON 1 protein CUP-SHAPED COTYLEDON 1 protein CUP-SHAPED COTYLEDON 2 protein CUP-SHAPED COTYLEDON 2 protein CUP-SHAPED COTYLEDON 1 NO APICAL MERISTEM protein CUP-SHAPED COTYLEDON 2-like protein CUP-SHAPED COTYLEDON 2-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00061 Fatty acid biosynthesis 2
gma00071 Fatty acid degradation 2
gma01212 Fatty acid metabolism 2
gma04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00280 Valine, leucine and isoleucine degradation 2
sbi00410 beta-Alanine metabolism 2
sbi00640 Propanoate metabolism 2
sbi01200 Carbon metabolism 2
sbi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100805987 100301934 4340969 103629107 606437 103859613 107917066 121204753 8082811 102577609 107826703 107800137
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