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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.bio   XRCC3   homolog of X-ray repair cross complementing 3 (XRCC3) 
 ath-m.9   XRCC3   homolog of X-ray repair cross complementing 3 (XRCC3) 
 ath-m.4.hor   XRCC3   homolog of X-ray repair cross complementing 3 (XRCC3) 
 ath-m.4.lig   XRCC3   homolog of X-ray repair cross complementing 3 (XRCC3) 
 ath-m.4.str   XRCC3   homolog of X-ray repair cross complementing 3 (XRCC3) 
 ath-m.4.tis   XRCC3   homolog of X-ray repair cross complementing 3 (XRCC3) 
 ghi-r.1   107942737   DNA repair protein XRCC3 homolog 
 ghi-r.1   107903316   DNA repair protein XRCC3 homolog 
 cit-r.1   102607526   DNA repair protein XRCC3 homolog 
 mtr-u.5   25488274   DNA repair protein XRCC3 homolog 
 nta-r.1   107819394   DNA repair protein XRCC3 homolog 
 nta-r.1   107831770   DNA repair protein XRCC3 homolog 
 osa-u.5   4329686   DNA repair protein XRCC3 homolog 
 zma-u.5   103627300   DNA repair protein XRCC3 homolog 
 tae-r.2   123127489   DNA repair protein XRCC3 homolog 
 hvu-r.1   123404013   DNA repair protein XRCC3 homolog 
 sbi-r.1   8068904   DNA repair protein XRCC3 homolog 
 bdi-r.1   100831144   DNA repair protein XRCC3 homolog 
 cre-r.1   CHLRE_06g278151v5   uncharacterized protein 

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Top 50 coexpressed genes to XRCC3 (ath-m.4.bio coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to XRCC3 (ath-m.4.bio coexpression data)

CoexMap"835850"


athXRCC3 | Entrez gene ID : 835850      
Species ath ghi cit mtr nta osa zma tae hvu sbi bdi cre vvi bra ppo bna gma sly sot
Paralog 6 2 1 1 2 1 1 1 1 1 1 1 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03440 [list] [network] Homologous recombination (60 genes)
GO BP
GO:0045003 [list] [network] double-strand break repair via synthesis-dependent strand annealing  (6 genes)  IDA  
GO:0006302 [list] [network] double-strand break repair  (68 genes)  IMP  
GO:0051321 [list] [network] meiotic cell cycle  (135 genes)  IMP  
GO CC
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0140664 [list] [network] ATP-dependent DNA damage sensor activity  (9 genes)  IEA  
GO:0003697 [list] [network] single-stranded DNA binding  (37 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_200554.1 [sequence] [blastp]
NP_851202.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 2,  mito 2,  plas 1,  cyto_mito 1,  golg_plas 1,  cyto_pero 1,  cyto_E.R. 1  (predict for NP_200554.1)
nucl 4,  cyto 2,  mito 2,  plas 1,  cyto_mito 1,  golg_plas 1,  cyto_pero 1,  cyto_E.R. 1  (predict for NP_851202.1)
Subcellular
localization
TargetP
other 7  (predict for NP_200554.1)
other 7  (predict for NP_851202.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.bio
for
XRCC3
ath-m.9
for
XRCC3
ath-m.4.hor
for
XRCC3
ath-m.4.lig
for
XRCC3
ath-m.4.str
for
XRCC3
ath-m.4.tis
for
XRCC3
ghi-r.1
for
107942737
ghi-r.1
for
107903316
cit-r.1
for
102607526
mtr-u.5
for
25488274
nta-r.1
for
107819394
nta-r.1
for
107831770
osa-u.5
for
4329686
zma-u.5
for
103627300
tae-r.2
for
123127489
hvu-r.1
for
123404013
sbi-r.1
for
8068904
bdi-r.1
for
100831144
cre-r.1
for
CHLRE_06g278151v5


Ortholog ID: 11005
Species ghi ghi cit mtr nta nta osa zma tae hvu sbi bdi cre
Symbol LOC107942737 LOC107903316 LOC102607526 LOC25488274 LOC107819394 LOC107831770 LOC4329686 LOC103627300 LOC123127489 LOC123404013 LOC8068904 LOC100831144 CHLRE_06g278151v5
Function* DNA repair protein XRCC3 homolog DNA repair protein XRCC3 homolog DNA repair protein XRCC3 homolog DNA repair protein XRCC3 homolog DNA repair protein XRCC3 homolog DNA repair protein XRCC3 homolog DNA repair protein XRCC3 homolog DNA repair protein XRCC3 homolog DNA repair protein XRCC3 homolog DNA repair protein XRCC3 homolog DNA repair protein XRCC3 homolog DNA repair protein XRCC3 homolog uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04145 Phagosome 4
ghi04517 IgSF CAM signaling 4
ghi04814 Motor proteins 4
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04145 Phagosome 4
ghi04517 IgSF CAM signaling 4
ghi04814 Motor proteins 4
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 16
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
nta00230 Purine metabolism 2
nta04141 Protein processing in endoplasmic reticulum 2
nta04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
nta00230 Purine metabolism 2
nta04141 Protein processing in endoplasmic reticulum 2
nta04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03410 Base excision repair 2
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00450 Selenocompound metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03020 RNA polymerase 2
sbi03420 Nucleotide excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107942737 107903316 102607526 25488274 107819394 107831770 4329686 103627300 123127489 123404013 8068904 100831144 66053696
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