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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.bio   AMI1   amidase 1 
 ath-u.5   AMI1   amidase 1 
 ath-r.7   AMI1   amidase 1 
 ath-m.9   AMI1   amidase 1 
 ath-e.2   AMI1   amidase 1 
 ath-m.4.hor   AMI1   amidase 1 
 ath-m.4.lig   AMI1   amidase 1 
 ath-m.4.str   AMI1   amidase 1 
 ath-m.4.tis   AMI1   amidase 1 
 bra-r.6   103843366   amidase 1 
 bna-r.1   106377010   amidase 1 
 bna-r.1   106420154   amidase 1 
 ghi-r.1   107887653   amidase 1 
 ghi-r.1   107955704   amidase 1 
 ghi-r.1   107939320   amidase 1 
 cit-r.1   102630626   amidase 1 
 cit-r.1   127898583   amidase 1-like 
 gma-u.5   100807674   amidase 1 
 gma-u.5   100780821   amidase 1 
 vvi-u.5   100240917   amidase 1 
 ppo-u.5   7481767   amidase 1 
 mtr-u.5   11406438   amidase 1 
 sly-u.5   104644402   amidase 1 
 sot-r.1   102584904   amidase 1 
 nta-r.1   107807935   amidase 1 
 nta-r.1   107776547   amidase 1-like 
 osa-u.5   4334956   amidase 1-like 
 osa-u.5   4334958   amidase 1-like 
 zma-u.5   100384731   Amidase 1 
 tae-r.2   123047495   amidase 1 
 tae-r.2   123050856   amidase 1 
 tae-r.2   123191225   amidase 1 
 hvu-r.1   123431360   amidase 1 
 sbi-r.1   8079206   amidase 1 
 bdi-r.1   100844843   amidase 1 
 cre-r.1   CHLRE_11g467630v5   uncharacterized protein 

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Top 50 coexpressed genes to AMI1 (ath-m.4.bio coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AMI1 (ath-m.4.bio coexpression data)

CoexMap"837418"


athAMI1 | Entrez gene ID : 837418      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 3 2 2 1 1 1 1 1 2 2 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00330 [list] [network] Arginine and proline metabolism (54 genes)
ath00360 [list] [network] Phenylalanine metabolism (33 genes)
ath00380 [list] [network] Tryptophan metabolism (64 genes)
GO BP
GO:0009684 [list] [network] indoleacetic acid biosynthetic process  (11 genes)  IDA  
GO:0009851 [list] [network] auxin biosynthetic process  (26 genes)  IDA  
GO CC
GO:0005654 [list] [network] nucleoplasm  (262 genes)  IDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0005576 [list] [network] extracellular region  (3158 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  IDA  
GO MF
GO:0043864 [list] [network] indoleacetamide hydrolase activity  (2 genes)  IDA  
GO:0004040 [list] [network] amidase activity  (8 genes)  IDA  
GO:0016810 [list] [network] hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds  (102 genes)  IDA  
Protein NP_563831.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  cysk 2,  cyto_pero 2,  nucl 1,  cysk_plas 1  (predict for NP_563831.1)
Subcellular
localization
TargetP
other 5,  chlo 3  (predict for NP_563831.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.bio
for
AMI1
ath-u.5
for
AMI1
ath-r.7
for
AMI1
ath-m.9
for
AMI1
ath-e.2
for
AMI1
ath-m.4.hor
for
AMI1
ath-m.4.lig
for
AMI1
ath-m.4.str
for
AMI1
ath-m.4.tis
for
AMI1
bra-r.6
for
103843366
bna-r.1
for
106377010
bna-r.1
for
106420154
ghi-r.1
for
107887653
ghi-r.1
for
107955704
ghi-r.1
for
107939320
cit-r.1
for
102630626
cit-r.1
for
127898583
gma-u.5
for
100807674
gma-u.5
for
100780821
vvi-u.5
for
100240917
ppo-u.5
for
7481767
mtr-u.5
for
11406438
sly-u.5
for
104644402
sot-r.1
for
102584904
nta-r.1
for
107807935
nta-r.1
for
107776547
osa-u.5
for
4334956
osa-u.5
for
4334958
zma-u.5
for
100384731
tae-r.2
for
123047495
tae-r.2
for
123050856
tae-r.2
for
123191225
hvu-r.1
for
123431360
sbi-r.1
for
8079206
bdi-r.1
for
100844843
cre-r.1
for
CHLRE_11g467630v5


Ortholog ID: 7785
Species ath bra bna bna ghi ghi ghi cit cit gma gma vvi ppo mtr sly sot nta nta osa osa zma tae tae tae hvu sbi bdi cre
Symbol AMI1 LOC103843366 LOC106377010 LOC106420154 LOC107887653 LOC107939320 LOC107939337 LOC102630626 LOC127898583 LOC100807674 LOC100780821 LOC100240917 LOC7481767 LOC11406438 LOC104644402 LOC102584904 LOC107807935 LOC107776547 LOC4334956 LOC4334958 LOC100384731 LOC123047495 LOC123050856 LOC123042978 LOC123431360 LOC8079206 LOC100844843 CHLRE_11g467630v5
Function* amidase 1 amidase 1 amidase 1 amidase 1 amidase 1 amidase 1 amidase 1 amidase 1 amidase 1-like amidase 1 amidase 1 amidase 1 amidase 1 amidase 1 amidase 1 amidase 1 amidase 1 amidase 1-like amidase 1-like amidase 1-like Amidase 1 amidase 1 amidase 1 amidase 1 amidase 1 amidase 1 amidase 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00790 Folate biosynthesis 3
bra03010 Ribosome 2
bra01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00460 Cyanoamino acid metabolism 2
bna00630 Glyoxylate and dicarboxylate metabolism 2
bna00910 Nitrogen metabolism 2
bna01200 Carbon metabolism 2
bna00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00460 Cyanoamino acid metabolism 2
bna00630 Glyoxylate and dicarboxylate metabolism 2
bna00910 Nitrogen metabolism 2
bna01200 Carbon metabolism 2
bna00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00040 Pentose and glucuronate interconversions 5
ghi00051 Fructose and mannose metabolism 5
ghi00330 Arginine and proline metabolism 2
ghi00360 Phenylalanine metabolism 2
ghi00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00040 Pentose and glucuronate interconversions 5
ghi00051 Fructose and mannose metabolism 5
ghi00330 Arginine and proline metabolism 2
ghi00360 Phenylalanine metabolism 2
ghi00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00910 Nitrogen metabolism 4
ghi00330 Arginine and proline metabolism 2
ghi00360 Phenylalanine metabolism 2
ghi00380 Tryptophan metabolism 2
ghi00460 Cyanoamino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01240 Biosynthesis of cofactors 2
cit00860 Porphyrin metabolism 2
cit00330 Arginine and proline metabolism 2
cit00360 Phenylalanine metabolism 2
cit00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00330 Arginine and proline metabolism 2
cit00360 Phenylalanine metabolism 2
cit00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03060 Protein export 3
gma00330 Arginine and proline metabolism 2
gma00360 Phenylalanine metabolism 2
gma00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00330 Arginine and proline metabolism 2
gma00360 Phenylalanine metabolism 2
gma00380 Tryptophan metabolism 2
gma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 5
vvi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00620 Pyruvate metabolism 3
mtr01200 Carbon metabolism 3
mtr01230 Biosynthesis of amino acids 2
mtr00630 Glyoxylate and dicarboxylate metabolism 2
mtr00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 7
sly00196 Photosynthesis - antenna proteins 5
sly00860 Porphyrin metabolism 4
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00330 Arginine and proline metabolism 2
nta00360 Phenylalanine metabolism 2
nta00380 Tryptophan metabolism 2
nta00562 Inositol phosphate metabolism 2
nta04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00562 Inositol phosphate metabolism 2
nta04070 Phosphatidylinositol signaling system 2
nta00330 Arginine and proline metabolism 2
nta00360 Phenylalanine metabolism 2
nta00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00630 Glyoxylate and dicarboxylate metabolism 4
osa01200 Carbon metabolism 4
osa04146 Peroxisome 2
osa00260 Glycine, serine and threonine metabolism 2
osa00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 3
zma00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00480 Glutathione metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00020 Citrate cycle (TCA cycle) 2
hvu00620 Pyruvate metabolism 2
hvu00630 Glyoxylate and dicarboxylate metabolism 2
hvu01200 Carbon metabolism 2
hvu00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00860 Porphyrin metabolism 2
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01240 Biosynthesis of cofactors 3
cre00620 Pyruvate metabolism 2
cre00710 Carbon fixation by Calvin cycle 2
cre01200 Carbon metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837418 103843366 106377010 106420154 107887653 107939320 107939337 102630626 127898583 100807674 100780821 100240917 7481767 11406438 104644402 102584904 107807935 107776547 4334956 4334958 100384731 123047495 123050856 123042978 123431360 8079206 100844843 5724366
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