Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.bio   LHCB6   light harvesting complex photosystem II subunit 6 
 ath-u.5   LHCB6   light harvesting complex photosystem II subunit 6 
 ath-r.7   LHCB6   light harvesting complex photosystem II subunit 6 
 ath-m.9   LHCB6   light harvesting complex photosystem II subunit 6 
 ath-e.2   LHCB6   light harvesting complex photosystem II subunit 6 
 ath-m.4.hor   LHCB6   light harvesting complex photosystem II subunit 6 
 ath-m.4.lig   LHCB6   light harvesting complex photosystem II subunit 6 
 ath-m.4.str   LHCB6   light harvesting complex photosystem II subunit 6 
 ath-m.4.tis   LHCB6   light harvesting complex photosystem II subunit 6 
 bra-r.6   103836017   chlorophyll a-b binding protein CP24 10B, chloroplastic 
 bra-r.6   103842881   chlorophyll a-b binding protein CP24, chloroplastic 
 bra-r.6   103872378   chlorophyll a-b binding protein CP24, chloroplastic 
 bna-r.1   106387569   chlorophyll a-b binding protein CP24, chloroplastic-like 
 bna-r.1   106346808   chlorophyll a-b binding protein CP24, chloroplastic-like 
 bna-r.1   106367078   chlorophyll a-b binding protein CP24, chloroplastic-like 
 ghi-r.1   107908969   chlorophyll a-b binding protein CP24 10A, chloroplastic 
 ghi-r.1   107898919   chlorophyll a-b binding protein CP24 10A, chloroplastic 
 ghi-r.1   121214817   chlorophyll a-b binding protein CP24 10A, chloroplastic 
 cit-r.1   102609463   chlorophyll a-b binding protein CP24 10A, chloroplastic 
 gma-u.5   100783223   chlorophyll a-b binding protein CP24 10A, chloroplastic 
 gma-u.5   100527463   light harvesting complex photosystem II subunit 
 gma-u.5   100500118   light harvesting complex photosystem II subunit 6 
 vvi-u.5   100241887   chlorophyll a-b binding protein CP24 10A, chloroplastic-like 
 ppo-u.5   7473011   chlorophyll a-b binding protein CP24 10A, chloroplastic 
 mtr-u.5   11430346   chlorophyll a-b binding protein CP24 10A, chloroplastic 
 sly-u.5   LHCP   chlorophyll a-b binding protein CP24 10B, chloroplastic-like 
 sly-u.5   CAB-10A   Chlorophyll a-b binding protein CP24 10A, chloroplastic 
 sot-r.1   102586172   chlorophyll a-b binding protein CP24 10B, chloroplastic 
 sot-r.1   102586836   chlorophyll a-b binding protein CP24 10A, chloroplastic 
 nta-r.1   107830508   chlorophyll a-b binding protein CP24 10A, chloroplastic 
 nta-r.1   107830507   chlorophyll a-b binding protein CP24 10A, chloroplastic 
 nta-r.1   107802876   chlorophyll a-b binding protein CP24 10A, chloroplastic-like 
 osa-u.5   4336028   chlorophyll a-b binding protein CP24, chloroplastic 
 zma-u.5   100273752   uncharacterized LOC100273752 
 zma-u.5   542321   light harvesting chlorophyll a/b binding protein 6 
 tae-r.2   123053510   chlorophyll a-b binding protein CP24 10B, chloroplastic 
 tae-r.2   123189406   chlorophyll a-b binding protein CP24 10B, chloroplastic 
 hvu-r.1   123426891   chlorophyll a-b binding protein CP24 10B, chloroplastic 
 sbi-r.1   8085855   chlorophyll a-b binding protein CP24 10B, chloroplastic 
 bdi-r.1   100842091   chlorophyll a-b binding protein CP24, chloroplastic 

close


Top 50 coexpressed genes to LHCB6 (ath-m.4.bio coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to LHCB6 (ath-m.4.bio coexpression data)

CoexMap"838151"


athLHCB6 | Entrez gene ID : 838151      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 3 3 3 1 3 1 1 1 2 2 3 1 2 2 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00196 [list] [network] Photosynthesis - antenna proteins (22 genes)
GO BP
GO:0010196 [list] [network] nonphotochemical quenching  (17 genes)  IMP  
GO:0015979 [list] [network] photosynthesis  (154 genes)  IMP NAS  
GO CC
GO:0009783 [list] [network] photosystem II antenna complex  (2 genes)  NAS  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (314 genes)  HDA  
GO:0009534 [list] [network] chloroplast thylakoid  (417 genes)  HDA  
GO:0009579 [list] [network] thylakoid  (507 genes)  HDA IDA  
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO:0005634 [list] [network] nucleus  (10367 genes)  HDA  
GO MF
GO:0016168 [list] [network] chlorophyll binding  (21 genes)  ISS  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
Protein NP_173034.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  cyto 1  (predict for NP_173034.1)
Subcellular
localization
TargetP
mito 3  (predict for NP_173034.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.bio
for
LHCB6
ath-u.5
for
LHCB6
ath-r.7
for
LHCB6
ath-m.9
for
LHCB6
ath-e.2
for
LHCB6
ath-m.4.hor
for
LHCB6
ath-m.4.lig
for
LHCB6
ath-m.4.str
for
LHCB6
ath-m.4.tis
for
LHCB6
bra-r.6
for
103836017
bra-r.6
for
103842881
bra-r.6
for
103872378
bna-r.1
for
106387569
bna-r.1
for
106346808
bna-r.1
for
106367078
ghi-r.1
for
107908969
ghi-r.1
for
107898919
ghi-r.1
for
121214817
cit-r.1
for
102609463
gma-u.5
for
100783223
gma-u.5
for
100527463
gma-u.5
for
100500118
vvi-u.5
for
100241887
ppo-u.5
for
7473011
mtr-u.5
for
11430346
sly-u.5
for
LHCP
sly-u.5
for
CAB-10A
sot-r.1
for
102586172
sot-r.1
for
102586836
nta-r.1
for
107830508
nta-r.1
for
107830507
nta-r.1
for
107802876
osa-u.5
for
4336028
zma-u.5
for
100273752
zma-u.5
for
542321
tae-r.2
for
123053510
tae-r.2
for
123189406
hvu-r.1
for
123426891
sbi-r.1
for
8085855
bdi-r.1
for
100842091


Ortholog ID: 5614
Species ath bra bra bra bna bna bna ghi ghi ghi cit gma gma gma vvi ppo mtr sly sly sot sot nta nta nta osa zma zma tae tae hvu sbi bdi
Symbol LHCB6 LOC103836017 LOC103842881 LOC103872378 LOC106387569 LOC106346808 LOC106367078 LOC107908969 LOC107898919 LOC121214817 LOC102609463 LOC100783223 LOC100527463 LOC100500118 LOC100241887 LOC7473011 LOC11430346 LHCP CAB-10A LOC102586172 LOC102586836 LOC107830508 LOC107830507 LOC107792047 LOC4336028 LOC100273752 LOC542321 LOC123053510 LOC123189406 LOC123426891 LOC8085855 LOC100842091
Function* light harvesting complex photosystem II subunit 6 chlorophyll a-b binding protein CP24 10B, chloroplastic chlorophyll a-b binding protein CP24, chloroplastic chlorophyll a-b binding protein CP24, chloroplastic chlorophyll a-b binding protein CP24, chloroplastic-like chlorophyll a-b binding protein CP24, chloroplastic-like chlorophyll a-b binding protein CP24, chloroplastic-like chlorophyll a-b binding protein CP24 10A, chloroplastic chlorophyll a-b binding protein CP24 10A, chloroplastic chlorophyll a-b binding protein CP24 10A, chloroplastic chlorophyll a-b binding protein CP24 10A, chloroplastic chlorophyll a-b binding protein CP24 10A, chloroplastic light harvesting complex photosystem II subunit light harvesting complex photosystem II subunit 6 chlorophyll a-b binding protein CP24 10A, chloroplastic-like chlorophyll a-b binding protein CP24 10A, chloroplastic chlorophyll a-b binding protein CP24 10A, chloroplastic chlorophyll a-b binding protein CP24 10B, chloroplastic-like Chlorophyll a-b binding protein CP24 10A, chloroplastic chlorophyll a-b binding protein CP24 10B, chloroplastic chlorophyll a-b binding protein CP24 10A, chloroplastic chlorophyll a-b binding protein CP24 10A, chloroplastic chlorophyll a-b binding protein CP24 10A, chloroplastic chlorophyll a-b binding protein CP24 10A, chloroplastic-like chlorophyll a-b binding protein CP24, chloroplastic uncharacterized LOC100273752 light harvesting chlorophyll a/b binding protein 6 chlorophyll a-b binding protein CP24 10B, chloroplastic chlorophyll a-b binding protein CP24 10B, chloroplastic chlorophyll a-b binding protein CP24 10B, chloroplastic chlorophyll a-b binding protein CP24 10B, chloroplastic chlorophyll a-b binding protein CP24, chloroplastic
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 11
ath00196 Photosynthesis - antenna proteins 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00196 Photosynthesis - antenna proteins 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00196 Photosynthesis - antenna proteins 9
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00196 Photosynthesis - antenna proteins 12
bra00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00196 Photosynthesis - antenna proteins 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00196 Photosynthesis - antenna proteins 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00196 Photosynthesis - antenna proteins 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00196 Photosynthesis - antenna proteins 12
ghi00195 Photosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00196 Photosynthesis - antenna proteins 12
ghi00195 Photosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 9
cit00196 Photosynthesis - antenna proteins 8
cit00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00196 Photosynthesis - antenna proteins 13
gma00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00196 Photosynthesis - antenna proteins 15
gma00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00196 Photosynthesis - antenna proteins 11
gma00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00196 Photosynthesis - antenna proteins 13
vvi00195 Photosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 8
ppo00196 Photosynthesis - antenna proteins 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00196 Photosynthesis - antenna proteins 7
mtr00195 Photosynthesis 6
mtr00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00196 Photosynthesis - antenna proteins 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00196 Photosynthesis - antenna proteins 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00196 Photosynthesis - antenna proteins 9
sot00195 Photosynthesis 6
sot00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00196 Photosynthesis - antenna proteins 12
sot00860 Porphyrin metabolism 4
sot00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00196 Photosynthesis - antenna proteins 5
nta00860 Porphyrin metabolism 2
nta00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00196 Photosynthesis - antenna proteins 4
nta00195 Photosynthesis 4
nta00860 Porphyrin metabolism 2
nta00730 Thiamine metabolism 2
nta00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00196 Photosynthesis - antenna proteins 7
nta00195 Photosynthesis 4
nta00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00196 Photosynthesis - antenna proteins 8
osa00195 Photosynthesis 5
osa00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00196 Photosynthesis - antenna proteins 12
zma00195 Photosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00196 Photosynthesis - antenna proteins 16
zma00195 Photosynthesis 2
zma00710 Carbon fixation by Calvin cycle 2
zma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00196 Photosynthesis - antenna proteins 11
tae00860 Porphyrin metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00196 Photosynthesis - antenna proteins 10
tae00860 Porphyrin metabolism 6
tae00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00196 Photosynthesis - antenna proteins 9
hvu00195 Photosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00196 Photosynthesis - antenna proteins 13
sbi00195 Photosynthesis 4
sbi00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00196 Photosynthesis - antenna proteins 12
bdi00195 Photosynthesis 5
bdi00860 Porphyrin metabolism 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838151 103836017 103842881 103872378 106387569 106346808 106367078 107908969 107898919 121214817 102609463 100783223 100527463 100500118 100241887 7473011 11430346 101256131 101256629 102586172 102586836 107830508 107830507 107792047 4336028 100273752 542321 123053510 123189406 123426891 8085855 100842091
The preparation time of this page was 0.2 [sec].