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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.bio   RAP2.12   uncharacterized protein 
 ath-u.5   RAP2.12   uncharacterized protein 
 ath-r.7   RAP2.12   uncharacterized protein 
 ath-m.9   RAP2.12   uncharacterized protein 
 ath-e.2   RAP2.12   uncharacterized protein 
 ath-m.4.hor   RAP2.12   uncharacterized protein 
 ath-m.4.lig   RAP2.12   uncharacterized protein 
 ath-m.4.str   RAP2.12   uncharacterized protein 
 ath-m.4.tis   RAP2.12   uncharacterized protein 
 ath-u.5   RAP2.2   uncharacterized protein 
 bra-r.6   103832647   ethylene-responsive transcription factor RAP2-12 
 bra-r.6   103859560   ethylene-responsive transcription factor RAP2-2 
 bra-r.6   103870045   ethylene-responsive transcription factor RAP2-2 
 bna-r.1   106393623   ethylene-responsive transcription factor RAP2-2 
 bna-r.1   106348784   ethylene-responsive transcription factor RAP2-2-like 
 bna-r.1   106439355   ethylene-responsive transcription factor RAP2-2-like 
 ghi-r.1   107960282   ethylene-responsive transcription factor RAP2-12 
 ghi-r.1   107897456   ethylene-responsive transcription factor RAP2-12 
 ghi-r.1   107960747   ethylene-responsive transcription factor RAP2-12-like 
 cit-r.1   102624066   ethylene-responsive transcription factor RAP2-12 
 gma-u.5   ERF7   ethylene-responsive transcription factor 7 
 gma-u.5   EREB   ethylene responsive protein 
 gma-u.5   100810376   ethylene-responsive transcription factor RAP2-2 
 vvi-u.5   100248027   ethylene-responsive transcription factor RAP2-12 
 ppo-u.5   7483575   ethylene-responsive transcription factor RAP2-12 
 ppo-u.5   18094682   ethylene-responsive transcription factor RAP2-12 
 mtr-u.5   11444630   ethylene-responsive transcription factor RAP2-2 
 mtr-u.5   25488000   ethylene-responsive transcription factor RAP2-2 
 sly-u.5   JERF3   GCC box binding protein C.4 
 sly-u.5   JERF1   transcription factor JERF1 
 sly-u.5   ERF-E5   ethylene response factor E.5 
 sot-r.1   102586220   ethylene-responsive transcription factor RAP2-12-like 
 sot-r.1   102601077   ethylene-responsive transcription factor RAP2-12-like 
 sot-r.1   102591860   ethylene-responsive transcription factor RAP2-12 
 nta-r.1   107764761   ethylene-responsive transcription factor RAP2-12 
 nta-r.1   107831940   ethylene-responsive transcription factor RAP2-12-like 
 nta-r.1   107828178   ethylene-responsive transcription factor RAP2-12-like 
 osa-u.5   4347142   ethylene-responsive transcription factor 1-like 
 osa-u.5   4340383   ethylene-responsive transcription factor 1-like 
 osa-u.5   4330935   ethylene-responsive transcription factor 1-like 
 zma-u.5   100283060   uncharacterized LOC100283060 
 zma-u.5   100283876   ethylene response element binding protein 
 zma-u.5   100284306   Ethylene response factor 
 tae-r.2   123121565   ethylene-responsive transcription factor 1 
 tae-r.2   123098191   ethylene-responsive transcription factor 1 
 hvu-r.1   123397648   ethylene-responsive transcription factor 1-like 
 sbi-r.1   8082696   ethylene-responsive transcription factor 1 
 sbi-r.1   8065451   ethylene-responsive transcription factor 1 
 sbi-r.1   110432817   ethylene-responsive transcription factor 1-like 
 bdi-r.1   100823681   ethylene-responsive transcription factor 1 
 bdi-r.1   100825554   ethylene-responsive transcription factor 1 
 bdi-r.1   100840803   ethylene-responsive transcription factor 1 

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Top 50 coexpressed genes to RAP2.12 (ath-m.4.bio coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RAP2.12 (ath-m.4.bio coexpression data)

CoexMap""


athRAP2.12 | Entrez gene ID : 841829      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 3 3 3 1 3 1 2 2 3 3 3 3 3 2 1 3 3 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
Function uncharacterized protein
KEGG
GO BP
GO:0070483 [list] [network] detection of hypoxia  (6 genes)  IEP  
GO:0009873 [list] [network] ethylene-activated signaling pathway  (61 genes)  IEA  
GO:2000280 [list] [network] regulation of root development  (79 genes)  IMP  
GO:0001666 [list] [network] response to hypoxia  (271 genes)  IMP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  IEA  
GO CC
GO:0005886 [list] [network] plasma membrane  (2598 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  IC IDA ISM  
GO MF
GO:0000976 [list] [network] transcription cis-regulatory region binding  (716 genes)  IPI  
GO:0003677 [list] [network] DNA binding  (1274 genes)  TAS  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  ISS TAS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001031185.1 [sequence] [blastp]
NP_001077718.1 [sequence] [blastp]
NP_175794.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto_nucl 4,  cyto 1  (predict for NP_001031185.1)
nucl 6,  cyto_nucl 4,  plas 1,  cyto 1  (predict for NP_001077718.1)
nucl 7,  cyto_nucl 4,  cyto 1  (predict for NP_175794.1)
Subcellular
localization
TargetP
other 4,  chlo 4  (predict for NP_001031185.1)
other 4,  chlo 3  (predict for NP_001077718.1)
other 4,  chlo 4  (predict for NP_175794.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.bio
for
RAP2.12
ath-u.5
for
RAP2.12
ath-r.7
for
RAP2.12
ath-m.9
for
RAP2.12
ath-e.2
for
RAP2.12
ath-m.4.hor
for
RAP2.12
ath-m.4.lig
for
RAP2.12
ath-m.4.str
for
RAP2.12
ath-m.4.tis
for
RAP2.12
ath-u.5
for
RAP2.2
bra-r.6
for
103832647
bra-r.6
for
103859560
bra-r.6
for
103870045
bna-r.1
for
106393623
bna-r.1
for
106348784
bna-r.1
for
106439355
ghi-r.1
for
107960282
ghi-r.1
for
107897456
ghi-r.1
for
107960747
cit-r.1
for
102624066
gma-u.5
for
ERF7
gma-u.5
for
EREB
gma-u.5
for
100810376
vvi-u.5
for
100248027
ppo-u.5
for
7483575
ppo-u.5
for
18094682
mtr-u.5
for
11444630
mtr-u.5
for
25488000
sly-u.5
for
JERF3
sly-u.5
for
JERF1
sly-u.5
for
ERF-E5
sot-r.1
for
102586220
sot-r.1
for
102601077
sot-r.1
for
102591860
nta-r.1
for
107764761
nta-r.1
for
107831940
nta-r.1
for
107828178
osa-u.5
for
4347142
osa-u.5
for
4340383
osa-u.5
for
4330935
zma-u.5
for
100283060
zma-u.5
for
100283876
zma-u.5
for
100284306
tae-r.2
for
123121565
tae-r.2
for
123098191
hvu-r.1
for
123397648
sbi-r.1
for
8082696
sbi-r.1
for
8065451
sbi-r.1
for
110432817
bdi-r.1
for
100823681
bdi-r.1
for
100825554
bdi-r.1
for
100840803

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Ortholog ID: 1080
Species ath ath bra bra bra bna bna bna ghi ghi ghi cit gma gma gma vvi ppo ppo mtr mtr sly sly sly sot sot sot nta nta nta osa osa osa zma zma tae tae tae hvu sbi sbi sbi bdi bdi bdi
Symbol RAP2.12 RAP2.2 LOC103832647 LOC103859560 LOC103870045 LOC106393623 LOC106439506 LOC106360402 LOC107897456 LOC107913841 LOC107958349 LOC102624066 ERF7 EREB LOC100810376 LOC100248027 LOC7483575 LOC18094682 LOC11444630 LOC25488000 JERF3 JERF1 ERF-E5 LOC102586220 LOC102601077 LOC102591860 LOC107764761 LOC107831940 LOC107763228 LOC4347142 LOC4340383 LOC4330935 LOC100284306 LOC103639077 LOC123133735 LOC123133734 LOC123141122 LOC123397648 LOC8082696 LOC8065451 LOC110432817 LOC100823681 LOC100825554 LOC100840803
Function* uncharacterized protein uncharacterized protein ethylene-responsive transcription factor RAP2-12 ethylene-responsive transcription factor RAP2-2 ethylene-responsive transcription factor RAP2-2 ethylene-responsive transcription factor RAP2-2 ethylene-responsive transcription factor RAP2-2-like ethylene-responsive transcription factor RAP2-12 ethylene-responsive transcription factor RAP2-12 ethylene-responsive transcription factor RAP2-12-like ethylene-responsive transcription factor RAP2-12 ethylene-responsive transcription factor RAP2-12 ethylene-responsive transcription factor 7 ethylene responsive protein ethylene-responsive transcription factor RAP2-2 ethylene-responsive transcription factor RAP2-12 ethylene-responsive transcription factor RAP2-12 ethylene-responsive transcription factor RAP2-12 ethylene-responsive transcription factor RAP2-2 ethylene-responsive transcription factor RAP2-2 GCC box binding protein C.4 transcription factor JERF1 ethylene response factor E.5 ethylene-responsive transcription factor RAP2-12-like ethylene-responsive transcription factor RAP2-12-like ethylene-responsive transcription factor RAP2-12 ethylene-responsive transcription factor RAP2-12 ethylene-responsive transcription factor RAP2-12-like ethylene-responsive transcription factor RAP2-2-like ethylene-responsive transcription factor 1-like ethylene-responsive transcription factor 1-like ethylene-responsive transcription factor 1-like Ethylene response factor putative AP2/EREBP transcription factor superfamily protein ethylene-responsive transcription factor 1-like ethylene-responsive transcription factor 1 ethylene-responsive transcription factor 1-like ethylene-responsive transcription factor 1-like ethylene-responsive transcription factor 1 ethylene-responsive transcription factor 1 ethylene-responsive transcription factor 1-like ethylene-responsive transcription factor 1 ethylene-responsive transcription factor 1 ethylene-responsive transcription factor 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 5
ath04016 MAPK signaling pathway - plant 2
ath04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04016 MAPK signaling pathway - plant 6
ath04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04145 Phagosome 7
bra04517 IgSF CAM signaling 7
bra04814 Motor proteins 7
bra00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04016 MAPK signaling pathway - plant 2
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04016 MAPK signaling pathway - plant 5
bna04070 Phosphatidylinositol signaling system 5
bna04075 Plant hormone signal transduction 5
bna04626 Plant-pathogen interaction 5
bna00230 Purine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 2
ghi00100 Steroid biosynthesis 2
ghi00561 Glycerolipid metabolism 2
ghi00564 Glycerophospholipid metabolism 2
ghi00565 Ether lipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 3
cit03015 mRNA surveillance pathway 2
cit03040 Spliceosome 2
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 2
vvi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04016 MAPK signaling pathway - plant 7
ppo04075 Plant hormone signal transduction 7
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 5
ppo00010 Glycolysis / Gluconeogenesis 2
ppo00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 2
mtr04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04016 MAPK signaling pathway - plant 7
sly04075 Plant hormone signal transduction 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03083 Polycomb repressive complex 2
sly04120 Ubiquitin mediated proteolysis 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
sot04120 Ubiquitin mediated proteolysis 2
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04016 MAPK signaling pathway - plant 10
sot04075 Plant hormone signal transduction 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04016 MAPK signaling pathway - plant 5
osa04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04016 MAPK signaling pathway - plant 4
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03083 Polycomb repressive complex 3
tae04120 Ubiquitin mediated proteolysis 3
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03083 Polycomb repressive complex 3
tae04120 Ubiquitin mediated proteolysis 3
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00520 Amino sugar and nucleotide sugar metabolism 5
sbi01250 Biosynthesis of nucleotide sugars 5
sbi00040 Pentose and glucuronate interconversions 2
sbi00053 Ascorbate and aldarate metabolism 2
sbi00541 Biosynthesis of various nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00520 Amino sugar and nucleotide sugar metabolism 2
sbi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 5
bdi01230 Biosynthesis of amino acids 3
bdi01240 Biosynthesis of cofactors 2
bdi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
bdi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04712 Circadian rhythm - plant 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 841829 820643 103832647 103859560 103870045 106393623 106439506 106360402 107897456 107913841 107958349 102624066 100818646 547957 100810376 100248027 7483575 18094682 11444630 25488000 543910 544182 101261693 102586220 102601077 102591860 107764761 107831940 107763228 4347142 4340383 4330935 100284306 103639077 123133735 123133734 123141122 123397648 8082696 8065451 110432817 100823681 100825554 100840803
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