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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.bio   CLPP3   CLP protease proteolytic subunit 3 
 ath-u.5   CLPP3   CLP protease proteolytic subunit 3 
 ath-r.7   CLPP3   CLP protease proteolytic subunit 3 
 ath-m.9   CLPP3   CLP protease proteolytic subunit 3 
 ath-e.2   CLPP3   CLP protease proteolytic subunit 3 
 ath-m.4.hor   CLPP3   CLP protease proteolytic subunit 3 
 ath-m.4.lig   CLPP3   CLP protease proteolytic subunit 3 
 ath-m.4.str   CLPP3   CLP protease proteolytic subunit 3 
 ath-m.4.tis   CLPP3   CLP protease proteolytic subunit 3 
 bra-r.6   103831118   ATP-dependent Clp protease proteolytic subunit 3, chloroplastic 
 bna-r.1   106353888   ATP-dependent Clp protease proteolytic subunit 3, chloroplastic 
 bna-r.1   106348577   ATP-dependent Clp protease proteolytic subunit 3, chloroplastic 
 ghi-r.1   107953925   ATP-dependent Clp protease proteolytic subunit 3, chloroplastic 
 ghi-r.1   107936630   ATP-dependent Clp protease proteolytic subunit 3, chloroplastic 
 cit-r.1   102613764   ATP-dependent Clp protease proteolytic subunit 3, chloroplastic 
 gma-u.5   100778609   ATP-dependent Clp protease proteolytic subunit 3, chloroplastic 
 gma-u.5   100795295   ATP-dependent Clp protease proteolytic subunit 3, chloroplastic 
 vvi-u.5   100265683   ATP-dependent Clp protease proteolytic subunit 3, chloroplastic 
 ppo-u.5   7487367   ATP-dependent Clp protease proteolytic subunit 3, chloroplastic 
 mtr-u.5   11436233   ATP-dependent Clp protease proteolytic subunit 3, chloroplastic 
 sly-u.5   101261866   ATP-dependent Clp protease proteolytic subunit 3, chloroplastic 
 sot-r.1   102600187   ATP-dependent Clp protease proteolytic subunit 3, chloroplastic 
 nta-r.1   107777950   ATP-dependent Clp protease proteolytic subunit 3, chloroplastic 
 nta-r.1   107831176   ATP-dependent Clp protease proteolytic subunit 3, chloroplastic-like 
 osa-u.5   4324049   ATP-dependent Clp protease proteolytic subunit 3, chloroplastic 
 zma-u.5   100282832   ATP-dependent Clp protease proteolytic subunit 1 
 tae-r.2   123078301   ATP-dependent Clp protease proteolytic subunit 3, chloroplastic 
 tae-r.2   123069877   ATP-dependent Clp protease proteolytic subunit 3, chloroplastic 
 tae-r.2   123061242   ATP-dependent Clp protease proteolytic subunit 3, chloroplastic 
 hvu-r.1   123443629   ATP-dependent Clp protease proteolytic subunit 3, chloroplastic 
 sbi-r.1   8069569   ATP-dependent Clp protease proteolytic subunit 3, chloroplastic 
 bdi-r.1   100828490   ATP-dependent Clp protease proteolytic subunit 3, chloroplastic 

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Top 50 coexpressed genes to CLPP3 (ath-m.4.bio coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CLPP3 (ath-m.4.bio coexpression data)

CoexMap"842985"


athCLPP3 | Entrez gene ID : 842985      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 2 1 1 1 1 1 2 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0009840 [list] [network] chloroplastic endopeptidase Clp complex  (8 genes)  IDA  
GO:0009534 [list] [network] chloroplast thylakoid  (417 genes)  IDA  
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA IDA  
GO:0009532 [list] [network] plastid stroma  (704 genes)  IDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO MF
Protein NP_564880.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for NP_564880.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_564880.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.bio
for
CLPP3
ath-u.5
for
CLPP3
ath-r.7
for
CLPP3
ath-m.9
for
CLPP3
ath-e.2
for
CLPP3
ath-m.4.hor
for
CLPP3
ath-m.4.lig
for
CLPP3
ath-m.4.str
for
CLPP3
ath-m.4.tis
for
CLPP3
bra-r.6
for
103831118
bna-r.1
for
106353888
bna-r.1
for
106348577
ghi-r.1
for
107953925
ghi-r.1
for
107936630
cit-r.1
for
102613764
gma-u.5
for
100778609
gma-u.5
for
100795295
vvi-u.5
for
100265683
ppo-u.5
for
7487367
mtr-u.5
for
11436233
sly-u.5
for
101261866
sot-r.1
for
102600187
nta-r.1
for
107777950
nta-r.1
for
107831176
osa-u.5
for
4324049
zma-u.5
for
100282832
tae-r.2
for
123078301
tae-r.2
for
123069877
tae-r.2
for
123061242
hvu-r.1
for
123443629
sbi-r.1
for
8069569
bdi-r.1
for
100828490


Ortholog ID: 11110
Species ath bra bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol CLPP3 LOC103831118 LOC106353888 LOC106348577 LOC107953925 LOC107936630 LOC102613764 LOC100778609 LOC100795295 LOC100265683 LOC7487367 LOC11436233 LOC101261866 LOC102600187 LOC107777950 LOC107831176 LOC4324049 LOC100282832 LOC123078301 LOC123069877 LOC123061242 LOC123443629 LOC8069569 LOC100828490
Function* CLP protease proteolytic subunit 3 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic ATP-dependent Clp protease proteolytic subunit 3, chloroplastic ATP-dependent Clp protease proteolytic subunit 3, chloroplastic ATP-dependent Clp protease proteolytic subunit 3, chloroplastic ATP-dependent Clp protease proteolytic subunit 3, chloroplastic ATP-dependent Clp protease proteolytic subunit 3, chloroplastic ATP-dependent Clp protease proteolytic subunit 3, chloroplastic ATP-dependent Clp protease proteolytic subunit 3, chloroplastic ATP-dependent Clp protease proteolytic subunit 3, chloroplastic ATP-dependent Clp protease proteolytic subunit 3, chloroplastic ATP-dependent Clp protease proteolytic subunit 3, chloroplastic ATP-dependent Clp protease proteolytic subunit 3, chloroplastic ATP-dependent Clp protease proteolytic subunit 3, chloroplastic ATP-dependent Clp protease proteolytic subunit 3, chloroplastic ATP-dependent Clp protease proteolytic subunit 3, chloroplastic-like ATP-dependent Clp protease proteolytic subunit 3, chloroplastic ATP-dependent Clp protease proteolytic subunit 1 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic ATP-dependent Clp protease proteolytic subunit 3, chloroplastic ATP-dependent Clp protease proteolytic subunit 3, chloroplastic ATP-dependent Clp protease proteolytic subunit 3, chloroplastic ATP-dependent Clp protease proteolytic subunit 3, chloroplastic ATP-dependent Clp protease proteolytic subunit 3, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00030 Pentose phosphate pathway 2
bna00230 Purine metabolism 2
bna01200 Carbon metabolism 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00030 Pentose phosphate pathway 2
bna00230 Purine metabolism 2
bna01200 Carbon metabolism 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
ghi00450 Selenocompound metabolism 2
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
ghi00450 Selenocompound metabolism 2
ghi00053 Ascorbate and aldarate metabolism 2
ghi00480 Glutathione metabolism 2
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 2
vvi00620 Pyruvate metabolism 2
vvi01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae04141 Protein processing in endoplasmic reticulum 3
tae04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae04141 Protein processing in endoplasmic reticulum 3
tae04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae04141 Protein processing in endoplasmic reticulum 3
tae04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00860 Porphyrin metabolism 5
sbi01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 5
bdi01240 Biosynthesis of cofactors 3
bdi00860 Porphyrin metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842985 103831118 106353888 106348577 107953925 107936630 102613764 100778609 100795295 100265683 7487367 11436233 101261866 102600187 107777950 107831176 4324049 100282832 123078301 123069877 123061242 123443629 8069569 100828490
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