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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-r.5   100248922   biotin--protein ligase 1, chloroplastic 
 vvi-u.5   100248922   biotin--protein ligase 1, chloroplastic 
 vvi-m.5   100248922   biotin--protein ligase 1, chloroplastic 
 ath-u.5   HCS1   holocarboxylase synthase 1 
 gma-u.5   100818402   biotin--protein ligase 2 
 gma-u.5   100813650   biotin--protein ligase 2 
 bra-r.6   103852453   biotin--protein ligase 2 
 ppo-u.5   7495112   biotin--protein ligase 2 
 ppo-u.5   7460934   biotin--protein ligase 1, chloroplastic 
 mtr-u.5   11411288   biotin--protein ligase 2 
 ghi-r.1   107942037   biotin--protein ligase 2 
 ghi-r.1   107922700   biotin--protein ligase 2 
 bna-r.1   106392404   biotin--protein ligase 2 
 bna-r.1   125585745   biotin--protein ligase 2-like 
 cit-r.1   102613353   biotin--protein ligase 2-like 
 sly-u.5   101252547   biotin--protein ligase 2-like 
 sot-r.1   102584525   biotin--protein ligase 2-like 
 nta-r.1   107819232   biotin--protein ligase 2 
 nta-r.1   107787843   biotin--protein ligase 2 
 osa-u.5   4328417   biotin--protein ligase 2 
 zma-u.5   103626660   biotin--protein ligase 2 
 tae-r.2   123132409   biotin--protein ligase 2 
 tae-r.2   123136485   biotin--protein ligase 2 
 tae-r.2   123143975   biotin--protein ligase 2 
 hvu-r.1   123402181   biotin--protein ligase 2-like 
 sbi-r.1   8074691   biotin--protein ligase 2 
 bdi-r.1   100844888   biotin--protein ligase 2 
 bdi-r.1   100835520   biotin--protein ligase 2 
 cre-r.1   CHLRE_09g406000v5   uncharacterized protein 

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Top 50 coexpressed genes to 100248922 (vvi-r.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100248922 (vvi-r.5 coexpression data)

CoexMap"100248922"


vviLOC100248922 | Entrez gene ID : 100248922      
Species vvi ath gma bra ppo mtr ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 1 2 1 2 1 2 2 1 1 1 2 1 1 3 1 1 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG vvi00780 [list] [network] Biotin metabolism (17 genes)
GO BP
GO:0036211 [list] [network] protein modification process  (1907 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (4496 genes)  IEA  
GO MF
GO:0004077 [list] [network] biotin--[biotin carboxyl-carrier protein] ligase activity  (1 genes)  IEA  
Protein XP_002285834.1 [sequence] [blastp]
XP_010664255.1 [sequence] [blastp]
XP_059590611.1 [sequence] [blastp]
XP_059590612.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 3,  extr 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_002285834.1)
chlo 8,  cyto 1,  plas 1,  extr 1,  cyto_plas 1  (predict for XP_010664255.1)
chlo 7,  cyto 1,  plas 1,  extr 1,  E.R. 1,  E.R._plas 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_059590611.1)
chlo 8,  cyto 1,  mito 1,  extr 1  (predict for XP_059590612.1)
Subcellular
localization
TargetP
other 6  (predict for XP_002285834.1)
chlo 6  (predict for XP_010664255.1)
chlo 6  (predict for XP_059590611.1)
chlo 6  (predict for XP_059590612.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-r.5
for
100248922
vvi-u.5
for
100248922
vvi-m.5
for
100248922
ath-u.5
for
HCS1
gma-u.5
for
100818402
gma-u.5
for
100813650
bra-r.6
for
103852453
ppo-u.5
for
7495112
ppo-u.5
for
7460934
mtr-u.5
for
11411288
ghi-r.1
for
107942037
ghi-r.1
for
107922700
bna-r.1
for
106392404
bna-r.1
for
125585745
cit-r.1
for
102613353
sly-u.5
for
101252547
sot-r.1
for
102584525
nta-r.1
for
107819232
nta-r.1
for
107787843
osa-u.5
for
4328417
zma-u.5
for
103626660
tae-r.2
for
123132409
tae-r.2
for
123136485
tae-r.2
for
123143975
hvu-r.1
for
123402181
sbi-r.1
for
8074691
bdi-r.1
for
100844888
bdi-r.1
for
100835520
cre-r.1
for
CHLRE_09g406000v5


Ortholog ID: 7163
Species vvi ath gma gma bra ppo ppo mtr ghi ghi bna bna cit sly sot nta nta osa zma tae tae hvu sbi bdi bdi cre
Symbol LOC100248922 HCS1 LOC100818402 LOC100813650 LOC103852453 LOC7495112 LOC7460934 LOC11411288 LOC107942037 LOC107922700 LOC106392404 LOC125585745 LOC102613353 LOC101252547 LOC102584525 LOC107819232 LOC107787843 LOC4328417 LOC103626660 LOC123136485 LOC123143975 LOC123402181 LOC8074691 LOC100844888 LOC100835520 CHLRE_09g406000v5
Function* biotin--protein ligase 1, chloroplastic holocarboxylase synthase 1 biotin--protein ligase 2 biotin--protein ligase 2 biotin--protein ligase 2 biotin--protein ligase 2 biotin--protein ligase 1, chloroplastic biotin--protein ligase 2 biotin--protein ligase 2 biotin--protein ligase 2 biotin--protein ligase 2 biotin--protein ligase 2-like biotin--protein ligase 2-like biotin--protein ligase 2-like biotin--protein ligase 2-like biotin--protein ligase 2 biotin--protein ligase 2 biotin--protein ligase 2 biotin--protein ligase 2 biotin--protein ligase 2 biotin--protein ligase 2 biotin--protein ligase 2-like biotin--protein ligase 2 biotin--protein ligase 2 biotin--protein ligase 2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00780 Biotin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01240 Biosynthesis of cofactors 4
gma00670 One carbon pool by folate 3
gma01200 Carbon metabolism 3
gma00780 Biotin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00620 Pyruvate metabolism 10
bra01200 Carbon metabolism 10
bra00010 Glycolysis / Gluconeogenesis 8
bra00020 Citrate cycle (TCA cycle) 4
bra00785 Lipoic acid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00941 Flavonoid biosynthesis 4
ghi00780 Biotin metabolism 2
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi00999 Biosynthesis of various plant secondary metabolites 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00941 Flavonoid biosynthesis 4
ghi00780 Biotin metabolism 2
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi00999 Biosynthesis of various plant secondary metabolites 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00620 Pyruvate metabolism 8
bna01200 Carbon metabolism 8
bna00010 Glycolysis / Gluconeogenesis 6
bna01230 Biosynthesis of amino acids 4
bna00780 Biotin metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00620 Pyruvate metabolism 8
bna01200 Carbon metabolism 8
bna00010 Glycolysis / Gluconeogenesis 6
bna00780 Biotin metabolism 4
bna00640 Propanoate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00500 Starch and sucrose metabolism 2
cit00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 8
sly01240 Biosynthesis of cofactors 3
sly01200 Carbon metabolism 3
sly00780 Biotin metabolism 2
sly00061 Fatty acid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00230 Purine metabolism 2
sot00240 Pyrimidine metabolism 2
sot00480 Glutathione metabolism 2
sot01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00780 Biotin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00780 Biotin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03020 RNA polymerase 3
osa03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00564 Glycerophospholipid metabolism 3
tae04070 Phosphatidylinositol signaling system 3
tae00780 Biotin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00564 Glycerophospholipid metabolism 3
tae04070 Phosphatidylinositol signaling system 3
tae00780 Biotin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04144 Endocytosis 2
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100248922 817112 100818402 100813650 103852453 7495112 7460934 11411288 107942037 107922700 106392404 125585745 102613353 101252547 102584525 107819232 107787843 4328417 103626660 123136485 123143975 123402181 8074691 100844888 100835520 5723136
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