Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-r.5   100259353   pentatricopeptide repeat-containing protein At4g20770 
 vvi-u.5   100259353   pentatricopeptide repeat-containing protein At4g20770 
 gma-u.5   100792265   pentatricopeptide repeat-containing protein At4g20770 
 bra-r.6   103858324   pentatricopeptide repeat-containing protein At4g20770 
 mtr-u.5   11433731   pentatricopeptide repeat-containing protein At4g20770 
 ghi-r.1   107892312   pentatricopeptide repeat-containing protein At4g20770 
 ghi-r.1   107961888   pentatricopeptide repeat-containing protein At4g20770 
 cit-r.1   102626652   pentatricopeptide repeat-containing protein At4g20770 
 sly-u.5   101245771   pentatricopeptide repeat-containing protein 
 sot-r.1   102582314   pentatricopeptide repeat-containing protein At4g20770 
 nta-r.1   107784977   pentatricopeptide repeat-containing protein At4g20770-like 
 nta-r.1   107773703   pentatricopeptide repeat-containing protein At4g20770-like 
 osa-u.5   4328419   pentatricopeptide repeat-containing protein At4g20770 
 zma-u.5   100191397   Pentatricopeptide repeat-containing protein 
 tae-r.2   123143991   pentatricopeptide repeat-containing protein At4g20770 
 tae-r.2   123136495   pentatricopeptide repeat-containing protein At4g20770 
 tae-r.2   123132417   pentatricopeptide repeat-containing protein At4g20770 
 hvu-r.1   123404430   pentatricopeptide repeat-containing protein At4g20770 
 sbi-r.1   8074693   pentatricopeptide repeat-containing protein At4g20770 
 bdi-r.1   100831549   pentatricopeptide repeat-containing protein At4g20770 

close


Top 50 coexpressed genes to 100259353 (vvi-r.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to 100259353 (vvi-r.5 coexpression data)

CoexMap""


vviLOC100259353 | Entrez gene ID : 100259353      
Species vvi gma bra mtr ghi cit sly sot nta osa zma tae hvu sbi bdi cre ppo ath bna
Paralog 2 1 1 1 2 1 1 1 2 1 1 3 1 1 1 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
Function pentatricopeptide repeat-containing protein At4g20770
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (500 genes)  IEA  
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1286 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4232 genes)  IEA  
Protein XP_010655786.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 1,  cysk 1,  cysk_nucl 1  (predict for XP_010655786.1)
Subcellular
localization
TargetP
other 6  (predict for XP_010655786.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-r.5
for
100259353
vvi-u.5
for
100259353
gma-u.5
for
100792265
bra-r.6
for
103858324
mtr-u.5
for
11433731
ghi-r.1
for
107892312
ghi-r.1
for
107961888
cit-r.1
for
102626652
sly-u.5
for
101245771
sot-r.1
for
102582314
nta-r.1
for
107784977
nta-r.1
for
107773703
osa-u.5
for
4328419
zma-u.5
for
100191397
tae-r.2
for
123143991
tae-r.2
for
123136495
tae-r.2
for
123132417
hvu-r.1
for
123404430
sbi-r.1
for
8074693
bdi-r.1
for
100831549

Please wait a moment.



Ortholog ID: 11711
Species vvi gma bra mtr ghi ghi cit sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol LOC100259353 LOC100792265 LOC103858324 LOC11433731 LOC107892312 LOC107961888 LOC102626652 LOC101245771 LOC102582314 LOC107784977 LOC107773703 LOC4328419 LOC100191397 LOC123143991 LOC123136495 LOC123132417 LOC123404430 LOC8074693 LOC100831549
Function* pentatricopeptide repeat-containing protein At4g20770 pentatricopeptide repeat-containing protein At4g20770 pentatricopeptide repeat-containing protein At4g20770 pentatricopeptide repeat-containing protein At4g20770 pentatricopeptide repeat-containing protein At4g20770 pentatricopeptide repeat-containing protein At4g20770 pentatricopeptide repeat-containing protein At4g20770 pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At4g20770 pentatricopeptide repeat-containing protein At4g20770-like pentatricopeptide repeat-containing protein At4g20770-like pentatricopeptide repeat-containing protein At4g20770 Pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At4g20770 pentatricopeptide repeat-containing protein At4g20770 pentatricopeptide repeat-containing protein At4g20770 pentatricopeptide repeat-containing protein At4g20770 pentatricopeptide repeat-containing protein At4g20770 pentatricopeptide repeat-containing protein At4g20770
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01240 Biosynthesis of cofactors 3
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01240 Biosynthesis of cofactors 3
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03430 Mismatch repair 2
hvu03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100259353 100792265 103858324 11433731 107892312 107961888 102626652 101245771 102582314 107784977 107773703 4328419 100191397 123143991 123136495 123132417 123404430 8074693 100831549
The preparation time of this page was 0.2 [sec].