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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-r.5   104881971   pentatricopeptide repeat-containing protein At4g19191, mitochondrial 
 vvi-u.5   104881971   pentatricopeptide repeat-containing protein At4g19191, mitochondrial 
 gma-u.5   100812822   pentatricopeptide repeat-containing protein At4g19191, mitochondrial 
 mtr-u.5   25496618   pentatricopeptide repeat-containing protein DOT4, chloroplastic 
 ghi-r.1   107927332   pentatricopeptide repeat-containing protein At4g21065 
 ghi-r.1   107935563   pentatricopeptide repeat-containing protein At4g21065 
 ghi-r.1   121214893   pentatricopeptide repeat-containing protein At4g16835, mitochondrial-like 
 cit-r.1   102630661   pentatricopeptide repeat-containing protein DOT4, chloroplastic-like 
 osa-u.5   4329335   pentatricopeptide repeat-containing protein At3g12770 
 zma-u.5   100382456   uncharacterized LOC100382456 
 tae-r.2   123119295   pentatricopeptide repeat-containing protein At1g11290, chloroplastic 
 hvu-r.1   123398623   pentatricopeptide repeat-containing protein At1g11290, chloroplastic-like 
 bdi-r.1   100834942   pentatricopeptide repeat-containing protein At1g11290, chloroplastic 

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Top 50 coexpressed genes to 104881971 (vvi-r.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 104881971 (vvi-r.5 coexpression data)

CoexMap"104881971"


vviLOC104881971 | Entrez gene ID : 104881971    
Species vvi gma mtr ghi cit osa zma tae hvu bdi cre bra ppo ath nta bna sly sot sbi
Paralog 2 1 1 3 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (500 genes)  IEA  
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1286 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4232 genes)  IEA  
Protein XP_010662025.1 [sequence] [blastp]
XP_019081787.1 [sequence] [blastp]
XP_019081788.1 [sequence] [blastp]
XP_019081789.1 [sequence] [blastp]
XP_059599425.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 2,  E.R. 2,  nucl 1,  extr 1,  chlo_mito 1,  cysk_nucl 1,  E.R._vacu 1,  cyto_E.R. 1  (predict for XP_010662025.1)
chlo 3,  E.R. 3,  nucl 1,  mito 1,  cyto_E.R. 1  (predict for XP_019081787.1)
chlo 3,  E.R. 3,  nucl 1,  mito 1,  cyto_E.R. 1  (predict for XP_019081788.1)
chlo 3,  E.R. 3,  nucl 1,  mito 1,  cyto_E.R. 1  (predict for XP_019081789.1)
chlo 2,  E.R. 2,  nucl 1,  extr 1,  chlo_mito 1,  cysk_nucl 1,  E.R._vacu 1,  cyto_E.R. 1  (predict for XP_059599425.1)
Subcellular
localization
TargetP
other 3  (predict for XP_010662025.1)
other 5,  mito 3  (predict for XP_019081787.1)
other 5,  mito 3  (predict for XP_019081788.1)
other 5,  mito 3  (predict for XP_019081789.1)
other 3  (predict for XP_059599425.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-r.5
for
104881971
vvi-u.5
for
104881971
gma-u.5
for
100812822
mtr-u.5
for
25496618
ghi-r.1
for
107927332
ghi-r.1
for
107935563
ghi-r.1
for
121214893
cit-r.1
for
102630661
osa-u.5
for
4329335
zma-u.5
for
100382456
tae-r.2
for
123119295
hvu-r.1
for
123398623
bdi-r.1
for
100834942


Ortholog ID: 12768
Species vvi gma mtr ghi ghi ghi cit osa zma tae hvu bdi
Symbol LOC104881971 LOC100812822 LOC25496618 LOC107927332 LOC107935563 LOC121214893 LOC102630661 LOC4329335 LOC100382456 LOC123119295 LOC123398623 LOC100834942
Function* pentatricopeptide repeat-containing protein At4g19191, mitochondrial pentatricopeptide repeat-containing protein At4g19191, mitochondrial pentatricopeptide repeat-containing protein DOT4, chloroplastic pentatricopeptide repeat-containing protein At4g21065 pentatricopeptide repeat-containing protein At4g21065 pentatricopeptide repeat-containing protein At4g16835, mitochondrial-like pentatricopeptide repeat-containing protein DOT4, chloroplastic-like pentatricopeptide repeat-containing protein At3g12770 uncharacterized LOC100382456 pentatricopeptide repeat-containing protein At1g11290, chloroplastic pentatricopeptide repeat-containing protein At1g11290, chloroplastic-like pentatricopeptide repeat-containing protein At1g11290, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 3
gma03083 Polycomb repressive complex 3
gma00052 Galactose metabolism 2
gma00561 Glycerolipid metabolism 2
gma00600 Sphingolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00730 Thiamine metabolism 2
hvu01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 104881971 100812822 25496618 107927332 107935563 121214893 102630661 4329335 100382456 123119295 123398623 100834942
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