ATTED-II : GeneCoexpression result

Species	Gene	Description
vvi-u.5	100242533	uncharacterized LOC100242533
vvi-r.5	100242533	uncharacterized LOC100242533
vvi-m.5	100242533	uncharacterized LOC100242533
vvi-u.5	100253767	uncharacterized LOC100253767
ath-u.5	AT3G62200	Putative endonuclease or glycosyl hydrolase
gma-u.5	100819329	uncharacterized LOC100819329
gma-u.5	100808926	uncharacterized LOC100808926
gma-u.5	100794608	uncharacterized LOC100794608
bra-r.6	103842045	uncharacterized LOC103842045
ppo-u.5	7465211	uncharacterized LOC7465211
ppo-u.5	7465213	uncharacterized LOC7465213
ppo-u.5	7478875	uncharacterized LOC7478875
mtr-u.5	11425911	meiosis regulator and mRNA stability factor 1
mtr-u.5	11427228	uncharacterized LOC11427228
ghi-r.1	107911082	uncharacterized LOC107911082
ghi-r.1	107923856	uncharacterized LOC107923856
ghi-r.1	121223727	uncharacterized LOC121223727
bna-r.1	125581572	uncharacterized LOC125581572
cit-r.1	102623994	hypothetical protein
cit-r.1	102621420	uncharacterized LOC102621420
sly-u.5	101263469	uncharacterized LOC101263469
sot-r.1	102584209	uncharacterized LOC102584209
sot-r.1	102584983	uncharacterized LOC102584983
nta-r.1	107781288	uncharacterized LOC107781288
nta-r.1	107811109	uncharacterized LOC107811109
nta-r.1	107796831	uncharacterized LOC107796831
osa-u.5	4344038	uncharacterized LOC4344038
zma-u.5	103634414	uncharacterized LOC103634414
zma-u.5	103647883	uncharacterized LOC103647883
tae-r.2	123051931	uncharacterized LOC123051931
tae-r.2	123187810	uncharacterized LOC123187810
tae-r.2	123044055	uncharacterized LOC123044055
hvu-r.1	123425120	uncharacterized LOC123425120
sbi-r.1	8073079	uncharacterized LOC8073079
bdi-r.1	100823350	meiosis regulator and mRNA stability factor 1

Annotation

functional annotation

KEGG

GO BP

GO:0010468 [list] [network] regulation of gene expression

(1612 genes)

IEA

GO CC

GO:0005777 [list] [network] peroxisome

(68 genes)

IEA

GO MF

GO:0004540 [list] [network] RNA nuclease activity

(136 genes)

IEA

Protein

XP_002276596.2 [sequence] [blastp]
XP_010659748.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9	(predict for XP_002276596.2)
nucl 6, pero 4	(predict for XP_010659748.1)

Subcellular
localization
TargetP

other 7	(predict for XP_002276596.2)
other 7	(predict for XP_010659748.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	vvi-u.5 for 100242533	vvi-r.5 for 100242533	vvi-m.5 for 100242533	vvi-u.5 for 100253767	ath-u.5 for AT3G62200	gma-u.5 for 100819329	gma-u.5 for 100808926	gma-u.5 for 100794608	bra-r.6 for 103842045	ppo-u.5 for 7465211	ppo-u.5 for 7465213	ppo-u.5 for 7478875	mtr-u.5 for 11425911	mtr-u.5 for 11427228	ghi-r.1 for 107911082	ghi-r.1 for 107923856	ghi-r.1 for 121223727	bna-r.1 for 125581572	cit-r.1 for 102623994	cit-r.1 for 102621420	sly-u.5 for 101263469	sot-r.1 for 102584209	sot-r.1 for 102584983	nta-r.1 for 107781288	nta-r.1 for 107811109	nta-r.1 for 107796831	osa-u.5 for 4344038	zma-u.5 for 103634414	zma-u.5 for 103647883	tae-r.2 for 123051931	tae-r.2 for 123187810	tae-r.2 for 123044055	hvu-r.1 for 123425120	sbi-r.1 for 8073079	bdi-r.1 for 100823350

Ortholog

Ortholog ID: 3117

Species

vvi

ath

gma

bra

ppo

mtr

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

uncharacterized LOC100242533

uncharacterized LOC100253767

Putative endonuclease or glycosyl hydrolase

uncharacterized LOC100819329

uncharacterized LOC100808926

uncharacterized LOC100794384

uncharacterized LOC103842045

uncharacterized LOC7465211

uncharacterized LOC7478875

uncharacterized LOC18098477

meiosis regulator and mRNA stability factor 1

uncharacterized LOC11427228

uncharacterized LOC107923856

uncharacterized LOC121223727

uncharacterized LOC107922767

uncharacterized LOC125581572

uncharacterized LOC125578511

uncharacterized LOC106452001

hypothetical protein

uncharacterized LOC102621420

uncharacterized LOC101263469

uncharacterized LOC102584209

uncharacterized LOC107811109

uncharacterized LOC107796831

uncharacterized LOC142179584

uncharacterized LOC4344038

uncharacterized LOC103634414

uncharacterized LOC103647883

uncharacterized LOC123051931

uncharacterized LOC123187810

uncharacterized LOC123044055

uncharacterized LOC123425120

uncharacterized LOC8073079

meiosis regulator and mRNA stability factor 1

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3
gma04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	3
gma04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	6
ppo04144	Endocytosis	3
ppo04142	Lysosome	3
ppo04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00562	Inositol phosphate metabolism	3
mtr04070	Phosphatidylinositol signaling system	2
mtr04120	Ubiquitin mediated proteolysis	2
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	3
bna00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	3
bna00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03430	Mismatch repair	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03015	mRNA surveillance pathway	3
osa04141	Protein processing in endoplasmic reticulum	2
osa03018	RNA degradation	2
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	2
tae03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03013	Nucleocytoplasmic transport	3
sbi03040	Spliceosome	2

Expression

Expression pattern

Entrez Gene ID^*

100242533

100253767

825393

100819329

100808926

100794384

103842045

7465211

7478875

18098477

11425911

11427228

107923856

121223727

107922767

125581572

125578511

106452001

102623994

102621420

101263469

102584209

107811109

107796831

142179584

4344038

103634414

103647883

123051931

123187810

123044055

123425120

8073079

100823350

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100242533 (vvi-u.5 coexpression data)

Top 50 enrichment test to 100242533 (vvi-u.5 coexpression data)


Species	vvi	ath	gma	bra	ppo	mtr	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	1	3	1	3	2	3	1	2	1	2	3	1	2	3	1	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100242533 (vvi-u.5 coexpression data)

Top 50 enrichment test to 100242533 (vvi-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**