ATTED-II : GeneCoexpression result

Species	Gene	Description
mtr-u.5	11427228	uncharacterized LOC11427228
mtr-r.5	11427228	uncharacterized LOC11427228
mtr-m.5	11427228	uncharacterized LOC11427228
mtr-u.5	11425911	meiosis regulator and mRNA stability factor 1
gma-u.5	100819329	uncharacterized LOC100819329
gma-u.5	100808926	uncharacterized LOC100808926
gma-u.5	100794608	uncharacterized LOC100794608
ppo-u.5	7465211	uncharacterized LOC7465211
ppo-u.5	7465213	uncharacterized LOC7465213
ppo-u.5	7478875	uncharacterized LOC7478875
ath-u.5	AT3G62200	Putative endonuclease or glycosyl hydrolase
vvi-u.5	100242533	uncharacterized LOC100242533
vvi-u.5	100253767	uncharacterized LOC100253767
sly-u.5	101263469	uncharacterized LOC101263469
osa-u.5	4344038	uncharacterized LOC4344038
zma-u.5	103634414	uncharacterized LOC103634414
zma-u.5	103647883	uncharacterized LOC103647883

Annotation

functional annotation

KEGG

GO BP

GO:0010468 [list] [network] regulation of gene expression

(1961 genes)

IEA

GO CC

GO:0005777 [list] [network] peroxisome

(94 genes)

IEA

GO MF

GO:0004540 [list] [network] RNA nuclease activity

(462 genes)

IEA

Protein

XP_003626148.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10

(predict for XP_003626148.1)

Subcellular
localization
TargetP

other 8

(predict for XP_003626148.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	mtr-u.5 for 11427228	mtr-r.5 for 11427228	mtr-m.5 for 11427228	mtr-u.5 for 11425911	gma-u.5 for 100819329	gma-u.5 for 100808926	gma-u.5 for 100794608	ppo-u.5 for 7465211	ppo-u.5 for 7465213	ppo-u.5 for 7478875	ath-u.5 for AT3G62200	vvi-u.5 for 100242533	vvi-u.5 for 100253767	sly-u.5 for 101263469	osa-u.5 for 4344038	zma-u.5 for 103634414	zma-u.5 for 103647883

Ortholog

Ortholog ID: 3117

Species

mtr

gma

ppo

ath

vvi

ghi

bna

cit

sly

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

meiosis regulator and mRNA stability factor 1

uncharacterized LOC11427228

uncharacterized LOC100794384

uncharacterized LOC100819329

uncharacterized LOC18098477

uncharacterized LOC7478875

Putative endonuclease or glycosyl hydrolase

uncharacterized LOC100253767

uncharacterized LOC100242533

uncharacterized LOC121223727

uncharacterized LOC107922767

uncharacterized LOC125581572

uncharacterized LOC125578511

uncharacterized LOC102621420

hypothetical protein

uncharacterized LOC101263469

uncharacterized LOC142179584

uncharacterized LOC107811109

uncharacterized LOC4344038

uncharacterized LOC103647883

uncharacterized LOC103634414

uncharacterized LOC123187810

uncharacterized LOC123051931

uncharacterized LOC123425120

uncharacterized LOC8073079

meiosis regulator and mRNA stability factor 1

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00562	Inositol phosphate metabolism	3
mtr04070	Phosphatidylinositol signaling system	2
mtr04120	Ubiquitin mediated proteolysis	2
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	3
gma04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	6
ppo04144	Endocytosis	3
ppo04142	Lysosome	3
ppo04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	3
bna00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03430	Mismatch repair	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03015	mRNA surveillance pathway	3
osa04141	Protein processing in endoplasmic reticulum	2
osa03018	RNA degradation	2
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03013	Nucleocytoplasmic transport	3
sbi03040	Spliceosome	2

Expression

Expression pattern

Entrez Gene ID^*

11425911

11427228

100794384

100819329

18098477

7478875

825393

100253767

100242533

121223727

107922767

125581572

125578511

102621420

102623994

101263469

142179584

107811109

4344038

103647883

103634414

123187810

123051931

123425120

8073079

100823350

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 11427228 (mtr-u.5 coexpression data)

Top 50 enrichment test to 11427228 (mtr-u.5 coexpression data)


Species	mtr	gma	ppo	ath	vvi	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	4	3	3	1	2	1	1	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 11427228 (mtr-u.5 coexpression data)

Top 50 enrichment test to 11427228 (mtr-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**