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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-m.5   100273635   protein farnesyltransferase/geranylgeranyltransferase type I alphasubunit 
 zma-u.5   100273635   protein farnesyltransferase/geranylgeranyltransferase type I alphasubunit 
 zma-r.6   100273635   protein farnesyltransferase/geranylgeranyltransferase type I alphasubunit 
 sbi-r.1   8054810   protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha 
 osa-u.5   4347566   protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha 
 tae-r.2   123120739   protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha 
 tae-r.2   123114911   protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha-like 
 hvu-r.1   123399885   protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha 
 bdi-r.1   100830567   protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha 
 ath-u.5   FTA   farnesyltransferase A 
 gma-u.5   100790130   protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha-like 
 gma-u.5   100811502   protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha-like 
 sly-u.5   FTA   protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha 
 bra-r.6   108871859   protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha-like 
 bra-r.6   103870807   protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha 
 vvi-u.5   100247502   protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha 
 ppo-u.5   7491765   protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha 
 mtr-u.5   11424569   protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha 
 ghi-r.1   107904382   protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha 
 ghi-r.1   121217939   protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha 
 bna-r.1   106352548   protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha 
 bna-r.1   106380632   protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha 
 sot-r.1   102593792   protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha 
 cit-r.1   102617661   protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha 
 nta-r.1   107814428   protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha 
 nta-r.1   107798306   protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha 
 cre-r.1   CHLRE_01g016950v5   uncharacterized protein 

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Top 50 coexpressed genes to 100273635 (zma-m.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100273635 (zma-m.5 coexpression data)

CoexMap"100273635"


zmaLOC100273635 | Entrez gene ID : 100273635      
Species zma sbi osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 3 1 1 2 1 1 1 2 1 2 1 1 1 2 2 1 1 2 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG zma00900 [list] [network] Terpenoid backbone biosynthesis (71 genes)
GO BP
GO:0018343 [list] [network] protein farnesylation  (3 genes)  IEA  
GO:0018344 [list] [network] protein geranylgeranylation  (8 genes)  IEA  
GO CC
GO:0005953 [list] [network] CAAX-protein geranylgeranyltransferase complex  (3 genes)  IEA  
GO:0005965 [list] [network] protein farnesyltransferase complex  (3 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (5465 genes)  IEA  
GO MF
GO:0004660 [list] [network] protein farnesyltransferase activity  (3 genes)  IEA  
GO:0004662 [list] [network] CAAX-protein geranylgeranyltransferase activity  (3 genes)  IEA  
Protein NP_001141523.1 [sequence] [blastp]
XP_008667533.1 [sequence] [blastp]
XP_008667534.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  E.R. 1,  chlo 1,  nucl 1,  mito 1,  plas 1,  chlo_mito 1,  nucl_plas 1,  E.R._vacu 1,  mito_plas 1  (predict for NP_001141523.1)
cyto 6,  E.R. 1,  chlo 1,  nucl 1,  mito 1,  plas 1,  chlo_mito 1,  nucl_plas 1,  E.R._vacu 1,  mito_plas 1  (predict for XP_008667533.1)
cyto 6,  E.R. 1,  chlo 1,  nucl 1,  mito 1,  plas 1,  chlo_mito 1,  nucl_plas 1,  E.R._vacu 1,  mito_plas 1  (predict for XP_008667534.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001141523.1)
other 8  (predict for XP_008667533.1)
other 8  (predict for XP_008667534.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-m.5
for
100273635
zma-u.5
for
100273635
zma-r.6
for
100273635
sbi-r.1
for
8054810
osa-u.5
for
4347566
tae-r.2
for
123120739
tae-r.2
for
123114911
hvu-r.1
for
123399885
bdi-r.1
for
100830567
ath-u.5
for
FTA
gma-u.5
for
100790130
gma-u.5
for
100811502
sly-u.5
for
FTA
bra-r.6
for
108871859
bra-r.6
for
103870807
vvi-u.5
for
100247502
ppo-u.5
for
7491765
mtr-u.5
for
11424569
ghi-r.1
for
107904382
ghi-r.1
for
121217939
bna-r.1
for
106352548
bna-r.1
for
106380632
sot-r.1
for
102593792
cit-r.1
for
102617661
nta-r.1
for
107814428
nta-r.1
for
107798306
cre-r.1
for
CHLRE_01g016950v5


Ortholog ID: 6909
Species zma sbi osa tae tae hvu bdi ath gma gma sly bra bra vvi ppo mtr ghi ghi bna bna bna sot cit nta nta cre
Symbol LOC100273635 LOC8054810 LOC4347566 LOC123120739 LOC123104391 LOC123399885 LOC100830567 FTA LOC100790130 LOC100811502 FTA LOC108871859 LOC103870807 LOC100247502 LOC7491765 LOC11424569 LOC107904382 LOC121217939 LOC106352548 LOC106380632 LOC106374702 LOC102593792 LOC102617661 LOC107814428 LOC107798306 CHLRE_01g016950v5
Function* protein farnesyltransferase/geranylgeranyltransferase type I alphasubunit protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha farnesyltransferase A protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha-like protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha-like protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha-like protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha-like protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 2
zma04136 Autophagy - other 2
zma04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 4
sbi04145 Phagosome 4
sbi04142 Lysosome 3
sbi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 3
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 6
tae04016 MAPK signaling pathway - plant 2
tae04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 6
tae04120 Ubiquitin mediated proteolysis 3
tae04144 Endocytosis 3
tae04814 Motor proteins 3
tae04820 Cytoskeleton in muscle cells 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03083 Polycomb repressive complex 2
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00630 Glyoxylate and dicarboxylate metabolism 4
bdi01200 Carbon metabolism 3
bdi00670 One carbon pool by folate 2
bdi04814 Motor proteins 2
bdi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03020 RNA polymerase 2
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 6
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 4
ghi00900 Terpenoid backbone biosynthesis 2
ghi03013 Nucleocytoplasmic transport 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03083 Polycomb repressive complex 4
bna04120 Ubiquitin mediated proteolysis 4
bna04141 Protein processing in endoplasmic reticulum 4
bna00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03083 Polycomb repressive complex 4
bna04120 Ubiquitin mediated proteolysis 4
bna04141 Protein processing in endoplasmic reticulum 4
bna00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 4
cit03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
nta00900 Terpenoid backbone biosynthesis 2
nta03010 Ribosome 2
nta00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 2
nta00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 4
cre00920 Sulfur metabolism 2
cre01320 Sulfur cycle 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100273635 8054810 4347566 123120739 123104391 123399885 100830567 825107 100790130 100811502 544036 108871859 103870807 100247502 7491765 11424569 107904382 121217939 106352548 106380632 106374702 102593792 102617661 107814428 107798306 5715138
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