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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   FTA   protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha 
 sly-r.6   FTA   protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha 
 sly-m.5   FTA   protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha 
 ath-u.5   FTA   farnesyltransferase A 
 gma-u.5   100811502   protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha-like 
 gma-u.5   100790130   protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha-like 
 vvi-u.5   100247502   protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha 
 ppo-u.5   7491765   protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha 
 mtr-u.5   11424569   protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha 
 osa-u.5   4347566   protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha 
 zma-u.5   100273635   protein farnesyltransferase/geranylgeranyltransferase type I alphasubunit 

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Top 50 coexpressed genes to FTA (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to FTA (sly-u.5 coexpression data)

CoexMap"544036"


slyFTA | Entrez gene ID : 544036      
Species sly ath gma vvi ppo mtr osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 3 1 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly00900 [list] [network] Terpenoid backbone biosynthesis (57 genes)
GO BP
GO:0018343 [list] [network] protein farnesylation  (2 genes)  IEA  
GO:0018344 [list] [network] protein geranylgeranylation  (6 genes)  IEA  
GO CC
GO:0005953 [list] [network] CAAX-protein geranylgeranyltransferase complex  (2 genes)  IEA  
GO:0005965 [list] [network] protein farnesyltransferase complex  (2 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (5127 genes)  IEA  
GO MF
GO:0004660 [list] [network] protein farnesyltransferase activity  (2 genes)  IEA  
GO:0004662 [list] [network] CAAX-protein geranylgeranyltransferase activity  (2 genes)  IEA  
Protein NP_001233963.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 8,  nucl 1  (predict for NP_001233963.2)
Subcellular
localization
TargetP
other 9  (predict for NP_001233963.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
FTA

.
sly-r.6
for
FTA

.
sly-m.5
for
FTA

.
ath-u.5
for
FTA

.
gma-u.5
for
100811502

.
gma-u.5
for
100790130

.
vvi-u.5
for
100247502

.
ppo-u.5
for
7491765

.
mtr-u.5
for
11424569

.
osa-u.5
for
4347566

.
zma-u.5
for
100273635

.


Ortholog ID: 6909
Species ath gma gma sly osa zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol FTA LOC100790130 LOC100811502 FTA LOC4347566 LOC100273635 LOC103870807 LOC108871859 LOC100247502 LOC7491765 LOC11424569 LOC123120739 LOC123104391 LOC123399885 LOC107904382 LOC121217939 LOC106374702 LOC106380632 CHLRE_01g016950v5 LOC8054810 LOC102593792 LOC102617661 LOC100830567 LOC107814428 LOC107798306
Function* farnesyltransferase A protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha-like protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha-like protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha protein farnesyltransferase/geranylgeranyltransferase type I alphasubunit protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha-like protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha-like protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha uncharacterized protein protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 3
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 2
zma04136 Autophagy - other 2
zma04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03020 RNA polymerase 2
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 6
tae04016 MAPK signaling pathway - plant 2
tae04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 6
tae04120 Ubiquitin mediated proteolysis 3
tae04144 Endocytosis 3
tae04814 Motor proteins 3
tae04820 Cytoskeleton in muscle cells 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03083 Polycomb repressive complex 2
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 6
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 4
ghi00900 Terpenoid backbone biosynthesis 2
ghi03013 Nucleocytoplasmic transport 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03083 Polycomb repressive complex 4
bna04120 Ubiquitin mediated proteolysis 4
bna04141 Protein processing in endoplasmic reticulum 4
bna00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 4
cre00920 Sulfur metabolism 2
cre01320 Sulfur cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 4
sbi04145 Phagosome 4
sbi04142 Lysosome 3
sbi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 4
cit03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00630 Glyoxylate and dicarboxylate metabolism 4
bdi01200 Carbon metabolism 3
bdi00670 One carbon pool by folate 2
bdi04814 Motor proteins 2
bdi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
nta00900 Terpenoid backbone biosynthesis 2
nta03010 Ribosome 2
nta00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 2
nta00510 N-Glycan biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 825107 100790130 100811502 544036 4347566 100273635 103870807 108871859 100247502 7491765 11424569 123120739 123104391 123399885 107904382 121217939 106374702 106380632 5715138 8054810 102593792 102617661 100830567 107814428 107798306
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