ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-m.5	100283402	eukaryotic translation initiation factor 3 subunit 1 alpha, 35kDa
zma-u.5	100283402	eukaryotic translation initiation factor 3 subunit 1 alpha, 35kDa
zma-r.6	100283402	eukaryotic translation initiation factor 3 subunit 1 alpha, 35kDa
zma-u.5	100283844	uncharacterized LOC100283844
sbi-r.1	8055041	eukaryotic translation initiation factor 3 subunit J-A
osa-u.5	4328129	uncharacterized LOC4328129
osa-u.5	4339203	uncharacterized LOC4339203
tae-r.2	123131878	eukaryotic translation initiation factor 3 subunit J-A
tae-r.2	123135849	eukaryotic translation initiation factor 3 subunit J-A
tae-r.2	123143372	eukaryotic translation initiation factor 3 subunit J-A
hvu-r.1	123402047	eukaryotic translation initiation factor 3 subunit J-A-like
bdi-r.1	100834330	eukaryotic translation initiation factor 3 subunit J-A
ath-u.5	AT5G37475	Translation initiation factor eIF3 subunit
ath-u.5	AT1G66070	Translation initiation factor eIF3 subunit
gma-u.5	100783973	eukaryotic translation initiation factor 3 subunit J
gma-u.5	100775181	eukaryotic translation initiation factor 3 subunit J
sly-u.5	101255357	uncharacterized LOC101255357
bra-r.6	103852306	eukaryotic translation initiation factor 3 subunit J
bra-r.6	103831084	eukaryotic translation initiation factor 3 subunit J
bra-r.6	103863717	eukaryotic translation initiation factor 3 subunit J
vvi-u.5	100242541	uncharacterized LOC100242541
ppo-u.5	7493579	uncharacterized LOC7493579
ppo-u.5	18106562	uncharacterized LOC18106562
mtr-u.5	25497362	eukaryotic translation initiation factor 3 subunit J
ghi-r.1	107940913	eukaryotic translation initiation factor 3 subunit J
ghi-r.1	107911951	eukaryotic translation initiation factor 3 subunit J
ghi-r.1	107926437	eukaryotic translation initiation factor 3 subunit J
bna-r.1	106446340	eukaryotic translation initiation factor 3 subunit J
bna-r.1	106381334	eukaryotic translation initiation factor 3 subunit J
bna-r.1	106376488	eukaryotic translation initiation factor 3 subunit J
sot-r.1	102592326	eukaryotic translation initiation factor 3 subunit J-A
cit-r.1	102610104	uncharacterized LOC102610104
nta-r.1	107771174	uncharacterized LOC107771174
nta-r.1	107799095	uncharacterized LOC107799095
nta-r.1	107760667	uncharacterized LOC107760667
cre-r.1	CHLRE_06g308850v5	uncharacterized protein

Top 50 coexpressed genes to 100283402 (zma-m.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100283402 (zma-m.5 coexpression data)

CoexMap"100283402"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005852 [list] [network] eukaryotic translation initiation factor 3 complex	(35 genes)	IEA
GO:0005737 [list] [network] cytoplasm	(5465 genes)	IEA

GO MF

GO:0003743 [list] [network] translation initiation factor activity

(86 genes)

IEA

Protein

NP_001149775.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, cyto 2, chlo 1, mito 1, plas 1, chlo_mito 1, mito_plas 1

(predict for NP_001149775.2)

Subcellular
localization
TargetP

other 9

(predict for NP_001149775.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-m.5 for 100283402	zma-u.5 for 100283402	zma-r.6 for 100283402	zma-u.5 for 100283844	sbi-r.1 for 8055041	osa-u.5 for 4328129	osa-u.5 for 4339203	tae-r.2 for 123131878	tae-r.2 for 123135849	tae-r.2 for 123143372	hvu-r.1 for 123402047	bdi-r.1 for 100834330	ath-u.5 for AT5G37475	ath-u.5 for AT1G66070	gma-u.5 for 100783973	gma-u.5 for 100775181	sly-u.5 for 101255357	bra-r.6 for 103852306	bra-r.6 for 103831084	bra-r.6 for 103863717	vvi-u.5 for 100242541	ppo-u.5 for 7493579	ppo-u.5 for 18106562	mtr-u.5 for 25497362	ghi-r.1 for 107940913	ghi-r.1 for 107911951	ghi-r.1 for 107926437	bna-r.1 for 106446340	bna-r.1 for 106381334	bna-r.1 for 106376488	sot-r.1 for 102592326	cit-r.1 for 102610104	nta-r.1 for 107771174	nta-r.1 for 107799095	nta-r.1 for 107760667	cre-r.1 for CHLRE_06g308850v5

Ortholog

Ortholog ID: 3982

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

eukaryotic translation initiation factor 3 subunit 1 alpha, 35kDa

uncharacterized LOC100283844

eukaryotic translation initiation factor 3 subunit J-A

uncharacterized LOC4328129

uncharacterized LOC4339203

eukaryotic translation initiation factor 3 subunit J-A

eukaryotic translation initiation factor 3 subunit J-A-like

eukaryotic translation initiation factor 3 subunit J-A

Translation initiation factor eIF3 subunit

eukaryotic translation initiation factor 3 subunit J

uncharacterized LOC101255357

eukaryotic translation initiation factor 3 subunit J

uncharacterized LOC100242541

uncharacterized LOC7493579

uncharacterized LOC18106562

eukaryotic translation initiation factor 3 subunit J

eukaryotic translation initiation factor 3 subunit J-A

uncharacterized LOC102610104

uncharacterized LOC107771174

uncharacterized LOC107760667

uncharacterized LOC107831054

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	5
zma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00190	Oxidative phosphorylation	2
sbi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03013	Nucleocytoplasmic transport	2
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	4
tae03018	RNA degradation	3
tae00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00970	Aminoacyl-tRNA biosynthesis	5
tae04141	Protein processing in endoplasmic reticulum	4
tae03013	Nucleocytoplasmic transport	2
tae03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	3
tae03013	Nucleocytoplasmic transport	2
tae03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00020	Citrate cycle (TCA cycle)	5
hvu01200	Carbon metabolism	5
hvu00270	Cysteine and methionine metabolism	4
hvu00710	Carbon fixation by Calvin cycle	4
hvu03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	2
ath03015	mRNA surveillance pathway	2
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00230	Purine metabolism	2
gma00730	Thiamine metabolism	2
gma01232	Nucleotide metabolism	2
gma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	2
gma03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04626	Plant-pathogen interaction	3
bra04075	Plant hormone signal transduction	2
bra00020	Citrate cycle (TCA cycle)	2
bra00310	Lysine degradation	2
bra00380	Tryptophan metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	4
bra03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00230	Purine metabolism	2
ghi00740	Riboflavin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00600	Sphingolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi01200	Carbon metabolism	5
ghi00020	Citrate cycle (TCA cycle)	4
ghi00010	Glycolysis / Gluconeogenesis	2
ghi00620	Pyruvate metabolism	2
ghi00785	Lipoic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	9
bna03018	RNA degradation	2
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	9
bna03018	RNA degradation	2
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03060	Protein export	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	2
cit00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	4
nta04141	Protein processing in endoplasmic reticulum	4
nta04144	Endocytosis	4
nta03018	RNA degradation	4
nta04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	4
nta04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	4
nta04141	Protein processing in endoplasmic reticulum	4
nta04144	Endocytosis	4
nta03018	RNA degradation	4
nta04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00970	Aminoacyl-tRNA biosynthesis	3
cre03060	Protein export	2

Expression

Expression pattern

Entrez Gene ID^*

100283402

100283844

8055041

4328129

4339203

123131878

123135849

123143372

123402047

100834330

833725

842921

100783973

100775181

101255357

103852306

103831084

103864143

100242541

7493579

18106562

25497362

107940913

107911951

107933246

106446340

106381334

106376488

102592326

102610104

107771174

107760667

107831054

5716834

The preparation time of this page was 0.1 [sec].


Species	zma	sbi	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	4	1	2	3	1	1	2	2	1	3	1	2	1	3	3	1	1	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100283402 (zma-m.5 coexpression data)

Top 50 enrichment test to 100283402 (zma-m.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**