ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-m.5	541793	brittle stalk-2-like protein 3
zma-u.5	541793	brittle stalk-2-like protein 3
zma-r.6	541793	brittle stalk-2-like protein 3
zma-u.5	778435	brittle stalk 2
zma-u.5	100037800	brittle stalk-2-like protein 7
zma-u.5	100037799	brittle stalk-2-like protein 6
sbi-r.1	8070042	COBRA-like protein 5
sbi-r.1	8079018	COBRA-like protein 1
osa-u.5	4343845	COBRA-like protein 6
osa-u.5	4338658	COBRA-like protein 3
tae-r.2	123119822	COBRA-like protein 5
tae-r.2	123091177	COBRA-like protein 2
tae-r.2	123128916	COBRA-like protein 3
hvu-r.1	123398393	COBRA-like protein 5
hvu-r.1	123403280	COBRA-like protein 3
bdi-r.1	100823628	COBRA-like protein 1
bdi-r.1	100829029	COBRA-like protein 5
ath-u.5	COB	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
ath-u.5	COBL1	COBRA-like protein 1 precursor
ath-u.5	COBL2	COBRA-like protein 2 precursor
gma-u.5	100783410	COBRA-like protein 4-like
gma-u.5	100815779	protein COBRA
gma-u.5	100815926	protein COBRA
sly-u.5	COBRA-like	protein COBRA-like
sly-u.5	101253146	COBRA-like protein 4
sly-u.5	101259823	COBRA-like protein 1
bra-r.6	103849801	COBRA-like protein 2
bra-r.6	103847531	COBRA-like protein 4
vvi-u.5	100263436	protein COBRA
vvi-u.5	100263971	protein COBRA
ppo-u.5	18105767	COBRA-like protein 4
mtr-u.5	25497596	protein COBRA
mtr-u.5	25497597	COBRA-like protein 4
ghi-r.1	107949774	COBRA-like protein 4
ghi-r.1	107946555	protein COBRA
bna-r.1	106367171	COBRA-like protein 4
bna-r.1	125587582	COBRA-like protein 1
bna-r.1	106439963	protein COBRA
sot-r.1	102600020	protein COBRA-like
sot-r.1	102598920	COBRA-like protein 4
sot-r.1	102604652	protein COBRA-like
cit-r.1	102610075	COBRA-like protein 4
cit-r.1	102609762	protein COBRA-like
nta-r.1	107807501	protein COBRA-like
nta-r.1	107773615	COBRA-like protein 4
nta-r.1	107784532	COBRA-like protein 1

Top 50 coexpressed genes to 541793 (zma-m.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 541793 (zma-m.5 coexpression data)

CoexMap"541793"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0052324 [list] [network] plant-type cell wall cellulose biosynthetic process	(7 genes)	IEA
GO:0010215 [list] [network] cellulose microfibril organization	(10 genes)	IEA

GO CC

GO:0005886 [list] [network] plasma membrane

(793 genes)

IEA

GO MF

Protein

NP_001104946.1 [sequence] [blastp]

Subcellular
localization
wolf

golg 3, vacu 3, golg_plas 2, extr 1, plas 1, chlo 1, E.R. 1

(predict for NP_001104946.1)

Subcellular
localization
TargetP

scret 9

(predict for NP_001104946.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-m.5 for 541793	zma-u.5 for 541793	zma-r.6 for 541793	zma-u.5 for 778435	zma-u.5 for 100037800	zma-u.5 for 100037799	sbi-r.1 for 8070042	sbi-r.1 for 8079018	osa-u.5 for 4343845	osa-u.5 for 4338658	tae-r.2 for 123119822	tae-r.2 for 123091177	tae-r.2 for 123128916	hvu-r.1 for 123398393	hvu-r.1 for 123403280	bdi-r.1 for 100823628	bdi-r.1 for 100829029	ath-u.5 for COB	ath-u.5 for COBL1	ath-u.5 for COBL2	gma-u.5 for 100783410	gma-u.5 for 100815779	gma-u.5 for 100815926	sly-u.5 for COBRA-like	sly-u.5 for 101253146	sly-u.5 for 101259823	bra-r.6 for 103849801	bra-r.6 for 103847531	vvi-u.5 for 100263436	vvi-u.5 for 100263971	ppo-u.5 for 18105767	mtr-u.5 for 25497596	mtr-u.5 for 25497597	ghi-r.1 for 107949774	ghi-r.1 for 107946555	bna-r.1 for 106367171	bna-r.1 for 125587582	bna-r.1 for 106439963	sot-r.1 for 102600020	sot-r.1 for 102598920	sot-r.1 for 102604652	cit-r.1 for 102610075	cit-r.1 for 102609762	nta-r.1 for 107807501	nta-r.1 for 107773615	nta-r.1 for 107784532

Ortholog

Ortholog ID: 307

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

COB

COBL2

COBL6

Function^*

brittle stalk-2-like protein 3

brittle stalk-2-like protein 6

brittle stalk-2-like protein 4

COBRA-like protein 5

COBRA-like protein 3

COBRA-like protein 6

COBRA-like protein 5

COBRA-like protein 1

COBRA-like protein 3

COBRA-like protein 1

COBRA-like protein 3

COBRA-like protein 6

COBRA-like protein 2

COBRA-like protein 1

COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family

COBRA-like protein 2 precursor

COBRA-like protein 6 precursor

COBRA-like protein 4-like

protein COBRA

protein COBRA-like

COBRA-like protein 4

COBRA-like protein 6

COBRA-like protein 4

protein COBRA

COBRA-like protein 4

COBRA-like protein 2

COBRA-like protein 1

protein COBRA

COBRA-like protein 1

COBRA-like protein 2

COBRA-like protein 6

COBRA-like protein 4

protein COBRA-like

COBRA-like protein 4

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04016	MAPK signaling pathway - plant	3
ath04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00999	Biosynthesis of various plant secondary metabolites	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00520	Amino sugar and nucleotide sugar metabolism	4
bra01250	Biosynthesis of nucleotide sugars	3
bra00053	Ascorbate and aldarate metabolism	2
bra01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00520	Amino sugar and nucleotide sugar metabolism	2
mtr01250	Biosynthesis of nucleotide sugars	2
mtr03008	Ribosome biogenesis in eukaryotes	2
mtr03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00010	Glycolysis / Gluconeogenesis	2
ghi00051	Fructose and mannose metabolism	2
ghi00052	Galactose metabolism	2
ghi00500	Starch and sucrose metabolism	2
ghi00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00010	Glycolysis / Gluconeogenesis	2
ghi00051	Fructose and mannose metabolism	2
ghi00052	Galactose metabolism	2
ghi00500	Starch and sucrose metabolism	2
ghi00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00500	Starch and sucrose metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

541793

100037799

100037798

8070042

8085923

4343845

4333114

4343844

123128916

123188006

123105056

123403280

123429721

123447814

100823628

836213

822697

837508

100783410

100815926

100782876

101251844

101253146

112940047

103856152

103860552

100263436

100263971

100244586

7480591

7480590

25495418

25495419

107951886

107955737

106399754

106346245

106362383

102598920

102584372

102604326

102610075

102609762

107807501

107807502

107806738

The preparation time of this page was 0.4 [sec].


Species	zma	sbi	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	6	2	2	3	2	2	3	3	3	2	2	1	2	2	3	3	2	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 541793 (zma-m.5 coexpression data)

Top 50 enrichment test to 541793 (zma-m.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**