ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	COBL2	COBRA-like protein 2 precursor
ath-r.7	COBL2	COBRA-like protein 2 precursor
ath-m.9	COBL2	COBRA-like protein 2 precursor
ath-e.2	COBL2	COBRA-like protein 2 precursor
ath-m.4.bio	COBL2	COBRA-like protein 2 precursor
ath-m.4.hor	COBL2	COBRA-like protein 2 precursor
ath-m.4.lig	COBL2	COBRA-like protein 2 precursor
ath-m.4.str	COBL2	COBRA-like protein 2 precursor
ath-m.4.tis	COBL2	COBRA-like protein 2 precursor
ath-u.5	COB	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
ath-u.5	COBL1	COBRA-like protein 1 precursor
ath-u.5	IRX6	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
bra-r.6	103875066	COBRA-like protein 2
bra-r.6	103836309	COBRA-like protein 6
bra-r.6	103849801	COBRA-like protein 2
bna-r.1	125587582	COBRA-like protein 1
bna-r.1	106453132	COBRA-like protein 6
bna-r.1	106432032	COBRA-like protein 4
ghi-r.1	107946555	protein COBRA
cit-r.1	102609762	protein COBRA-like
cit-r.1	102610075	COBRA-like protein 4
gma-u.5	100783410	COBRA-like protein 4-like
gma-u.5	100811581	protein COBRA
vvi-u.5	100263436	protein COBRA
vvi-u.5	100263971	protein COBRA
mtr-u.5	25495418	COBRA-like protein 1
mtr-u.5	25495419	protein COBRA
sly-u.5	101260119	COBRA-like protein 4
sly-u.5	101259823	COBRA-like protein 1
sly-u.5	101253146	COBRA-like protein 4
sot-r.1	102604326	COBRA-like protein 4
sot-r.1	102590522	COBRA-like protein 4
nta-r.1	107806738	COBRA-like protein 4
nta-r.1	107768224	protein COBRA-like
nta-r.1	107763917	COBRA-like protein 6
osa-u.5	4343845	COBRA-like protein 6
osa-u.5	4338658	COBRA-like protein 3
osa-u.5	4334147	COBRA-like protein 3
zma-u.5	541793	brittle stalk-2-like protein 3
zma-u.5	778435	brittle stalk 2
zma-u.5	100037800	brittle stalk-2-like protein 7
tae-r.2	123049694	COBRA-like protein 7
tae-r.2	123102634	COBRA-like protein 5
tae-r.2	123096176	COBRA-like protein 2
hvu-r.1	123452279	COBRA-like protein 3
hvu-r.1	123447814	COBRA-like protein 2
hvu-r.1	123442574	COBRA-like protein 5
sbi-r.1	8070042	COBRA-like protein 5
bdi-r.1	100829328	COBRA-like protein 2
bdi-r.1	100829029	COBRA-like protein 5

Top 50 coexpressed genes to COBL2 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to COBL2 (ath-u.5 coexpression data)

CoexMap"822697"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0052324 [list] [network] plant-type cell wall cellulose biosynthetic process	(10 genes)	IMP
GO:0010215 [list] [network] cellulose microfibril organization	(17 genes)	IMP
GO:0048354 [list] [network] mucilage biosynthetic process involved in seed coat development	(19 genes)	IMP
GO:0010214 [list] [network] seed coat development	(51 genes)	IMP
GO:0009832 [list] [network] plant-type cell wall biogenesis	(138 genes)	IMP
GO:0009664 [list] [network] plant-type cell wall organization	(170 genes)	IMP
GO:0048316 [list] [network] seed development	(775 genes)	IMP

GO CC

GO:0005797 [list] [network] Golgi medial cisterna	(58 genes)	HDA
GO:0005794 [list] [network] Golgi apparatus	(1198 genes)	HDA
GO:0005886 [list] [network] plasma membrane	(2598 genes)	HDA ISM
GO:0016020 [list] [network] membrane	(3740 genes)	TAS

GO MF

Protein

NP_566851.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, cyto 1, plas 1, cyto_plas 1, mito 1, extr 1, vacu 1, E.R. 1, golg 1, cyto_nucl 1, nucl_plas 1, E.R._vacu 1, cyto_pero 1, cysk_plas 1

(predict for NP_566851.1)

Subcellular
localization
TargetP

scret 9

(predict for NP_566851.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for COBL2	ath-r.7 for COBL2	ath-m.9 for COBL2	ath-e.2 for COBL2	ath-m.4.bio for COBL2	ath-m.4.hor for COBL2	ath-m.4.lig for COBL2	ath-m.4.str for COBL2	ath-m.4.tis for COBL2	ath-u.5 for COB	ath-u.5 for COBL1	ath-u.5 for IRX6	bra-r.6 for 103875066	bra-r.6 for 103836309	bra-r.6 for 103849801	bna-r.1 for 125587582	bna-r.1 for 106453132	bna-r.1 for 106432032	ghi-r.1 for 107946555	cit-r.1 for 102609762	cit-r.1 for 102610075	gma-u.5 for 100783410	gma-u.5 for 100811581	vvi-u.5 for 100263436	vvi-u.5 for 100263971	mtr-u.5 for 25495418	mtr-u.5 for 25495419	sly-u.5 for 101260119	sly-u.5 for 101259823	sly-u.5 for 101253146	sot-r.1 for 102604326	sot-r.1 for 102590522	nta-r.1 for 107806738	nta-r.1 for 107768224	nta-r.1 for 107763917	osa-u.5 for 4343845	osa-u.5 for 4338658	osa-u.5 for 4334147	zma-u.5 for 541793	zma-u.5 for 778435	zma-u.5 for 100037800	tae-r.2 for 123049694	tae-r.2 for 123102634	tae-r.2 for 123096176	hvu-r.1 for 123452279	hvu-r.1 for 123447814	hvu-r.1 for 123442574	sbi-r.1 for 8070042	bdi-r.1 for 100829328	bdi-r.1 for 100829029

Ortholog

Ortholog ID: 307

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

COBL2

COB

COBL6

Function^*

COBRA-like protein 2 precursor

COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family

COBRA-like protein 6 precursor

protein COBRA

COBRA-like protein 4

COBRA-like protein 2

COBRA-like protein 6

COBRA-like protein 1

COBRA-like protein 2

protein COBRA-like

COBRA-like protein 4

COBRA-like protein 4-like

protein COBRA

protein COBRA-like

protein COBRA

COBRA-like protein 4

COBRA-like protein 2

COBRA-like protein 1

protein COBRA

COBRA-like protein 4

protein COBRA-like

COBRA-like protein 6

COBRA-like protein 4

protein COBRA-like

COBRA-like protein 4

COBRA-like protein 6

COBRA-like protein 5

COBRA-like protein 1

brittle stalk-2-like protein 3

brittle stalk-2-like protein 6

brittle stalk-2-like protein 4

COBRA-like protein 3

COBRA-like protein 1

COBRA-like protein 3

COBRA-like protein 2

COBRA-like protein 6

COBRA-like protein 3

COBRA-like protein 5

COBRA-like protein 3

COBRA-like protein 1

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04016	MAPK signaling pathway - plant	3
ath04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00999	Biosynthesis of various plant secondary metabolites	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00520	Amino sugar and nucleotide sugar metabolism	4
bra01250	Biosynthesis of nucleotide sugars	3
bra00053	Ascorbate and aldarate metabolism	2
bra01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00010	Glycolysis / Gluconeogenesis	2
ghi00051	Fructose and mannose metabolism	2
ghi00052	Galactose metabolism	2
ghi00500	Starch and sucrose metabolism	2
ghi00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00010	Glycolysis / Gluconeogenesis	2
ghi00051	Fructose and mannose metabolism	2
ghi00052	Galactose metabolism	2
ghi00500	Starch and sucrose metabolism	2
ghi00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00520	Amino sugar and nucleotide sugar metabolism	2
mtr01250	Biosynthesis of nucleotide sugars	2
mtr03008	Ribosome biogenesis in eukaryotes	2
mtr03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00900	Terpenoid backbone biosynthesis	2

Expression

Expression pattern

Entrez Gene ID^*

822697

836213

837508

103860552

103856152

106399754

106346245

106362383

107951886

107955737

102609762

102610075

100783410

100815926

100782876

100263436

100263971

100244586

7480591

7480590

25495418

25495419

101253146

101251844

112940047

102604326

102598920

102584372

107806738

107807501

107807502

4343845

4333114

4343844

541793

100037799

100037798

123105056

123188006

123128916

123447814

123429721

123403280

8070042

8085923

100823628

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Species	ath	bra	bna	ghi	cit	gma	vvi	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	ppo	cre
Paralog	12	3	3	1	2	2	2	2	3	2	3	3	3	3	3	1	2	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to COBL2 (ath-u.5 coexpression data)

Top 50 enrichment test to COBL2 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**