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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-m.5   542425   proliferating cell nuclear antigen 1 
 zma-u.5   542425   proliferating cell nuclear antigen 1 
 zma-r.6   542425   proliferating cell nuclear antigen 1 
 zma-u.5   542357   proliferating cell nuclear antigen 2 
 sbi-r.1   8056408   proliferating cell nuclear antigen 
 osa-u.5   4331062   proliferating cell nuclear antigen-like 
 tae-r.2   123045996   proliferating cell nuclear antigen 
 tae-r.2   123053869   proliferating cell nuclear antigen 
 tae-r.2   123128871   proliferating cell nuclear antigen 
 hvu-r.1   123427208   proliferating cell nuclear antigen 
 hvu-r.1   123406159   proliferating cell nuclear antigen 
 bdi-r.1   100843467   proliferating cell nuclear antigen 
 ath-u.5   PCNA2   proliferating cell nuclear antigen 2 
 ath-u.5   PCNA1   proliferating cellular nuclear antigen 1 
 gma-u.5   100817651   proliferating cell nuclear antigen 
 gma-u.5   548079   proliferating cell nuclear antigen 
 sly-u.5   pcna   proliferating cell nuclear antigen 
 bra-r.6   103843463   proliferating cell nuclear antigen 
 bra-r.6   103868024   proliferating cellular nuclear antigen 1 
 vvi-u.5   100248466   proliferating cell nuclear antigen-like 
 ppo-u.5   7478554   proliferating cell nuclear antigen 
 ppo-u.5   7481501   proliferating cell nuclear antigen 
 mtr-u.5   25490757   proliferating cell nuclear antigen 
 ghi-r.1   121215525   proliferating cell nuclear antigen 
 ghi-r.1   107935704   proliferating cell nuclear antigen 
 ghi-r.1   107950214   proliferating cell nuclear antigen 
 bna-r.1   125578622   proliferating cell nuclear antigen-like 
 bna-r.1   125609439   proliferating cellular nuclear antigen 1-like 
 bna-r.1   106451525   proliferating cellular nuclear antigen 1 
 sot-r.1   102581875   proliferating cell nuclear antigen 
 cit-r.1   102627400   proliferating cell nuclear antigen 
 nta-r.1   107778290   proliferating cell nuclear antigen-like 
 nta-r.1   107779602   proliferating cell nuclear antigen 
 cre-r.1   CHLRE_12g515850v5   uncharacterized protein 

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Top 50 coexpressed genes to 542425 (zma-m.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 542425 (zma-m.5 coexpression data)

CoexMap"542425"


zmaLOC542425 | Entrez gene ID : 542425      
Species zma sbi osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 4 1 1 3 2 1 2 2 1 2 1 2 1 3 3 1 1 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG zma03030 [list] [network] DNA replication (56 genes)
zma03410 [list] [network] Base excision repair (53 genes)
zma03420 [list] [network] Nucleotide excision repair (94 genes)
zma03430 [list] [network] Mismatch repair (39 genes)
GO BP
GO:0006272 [list] [network] leading strand elongation  (7 genes)  IEA  
GO:0019985 [list] [network] translesion synthesis  (18 genes)  IEA  
GO:0006275 [list] [network] regulation of DNA replication  (19 genes)  IEA  
GO:0006298 [list] [network] mismatch repair  (21 genes)  IEA  
GO CC
GO:0043626 [list] [network] PCNA complex  (2 genes)  IEA  
GO MF
GO:0030337 [list] [network] DNA polymerase processivity factor activity  (2 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (2288 genes)  IEA  
Protein NP_001105461.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 1,  chlo 1,  pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001105461.1)
Subcellular
localization
TargetP
other 5,  scret 4  (predict for NP_001105461.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-m.5
for
542425
zma-u.5
for
542425
zma-r.6
for
542425
zma-u.5
for
542357
sbi-r.1
for
8056408
osa-u.5
for
4331062
tae-r.2
for
123045996
tae-r.2
for
123053869
tae-r.2
for
123128871
hvu-r.1
for
123427208
hvu-r.1
for
123406159
bdi-r.1
for
100843467
ath-u.5
for
PCNA2
ath-u.5
for
PCNA1
gma-u.5
for
100817651
gma-u.5
for
548079
sly-u.5
for
pcna
bra-r.6
for
103843463
bra-r.6
for
103868024
vvi-u.5
for
100248466
ppo-u.5
for
7478554
ppo-u.5
for
7481501
mtr-u.5
for
25490757
ghi-r.1
for
121215525
ghi-r.1
for
107935704
ghi-r.1
for
107950214
bna-r.1
for
125578622
bna-r.1
for
125609439
bna-r.1
for
106451525
sot-r.1
for
102581875
cit-r.1
for
102627400
nta-r.1
for
107778290
nta-r.1
for
107779602
cre-r.1
for
CHLRE_12g515850v5


Ortholog ID: 5071
Species zma zma sbi osa tae tae tae hvu hvu bdi ath ath gma gma sly bra bra vvi ppo ppo mtr ghi ghi ghi bna bna bna sot cit nta nta cre
Symbol LOC542425 LOC542357 LOC8056408 LOC4331062 LOC123053869 LOC123128871 LOC123146016 LOC123427208 LOC123406159 LOC100843467 PCNA2 PCNA1 LOC100817651 LOC548079 pcna LOC103843463 LOC103868024 LOC100248466 LOC7478554 LOC7481501 LOC25490757 LOC121215525 LOC107950214 LOC121212680 LOC125578622 LOC106451525 LOC106451515 LOC102581875 LOC102627400 LOC107778290 LOC107779602 CHLRE_12g515850v5
Function* proliferating cell nuclear antigen 1 proliferating cell nuclear antigen 2 proliferating cell nuclear antigen proliferating cell nuclear antigen-like proliferating cell nuclear antigen proliferating cell nuclear antigen proliferating cell nuclear antigen proliferating cell nuclear antigen proliferating cell nuclear antigen proliferating cell nuclear antigen proliferating cell nuclear antigen 2 proliferating cellular nuclear antigen 1 proliferating cell nuclear antigen proliferating cell nuclear antigen proliferating cell nuclear antigen proliferating cell nuclear antigen proliferating cellular nuclear antigen 1 proliferating cell nuclear antigen-like proliferating cell nuclear antigen proliferating cell nuclear antigen proliferating cell nuclear antigen proliferating cell nuclear antigen proliferating cell nuclear antigen proliferating cell nuclear antigen proliferating cell nuclear antigen-like proliferating cellular nuclear antigen 1 proliferating cellular nuclear antigen 1 proliferating cell nuclear antigen proliferating cell nuclear antigen proliferating cell nuclear antigen-like proliferating cell nuclear antigen uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 4
zma03430 Mismatch repair 4
zma03410 Base excision repair 3
zma03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 10
zma03420 Nucleotide excision repair 4
zma03430 Mismatch repair 4
zma00230 Purine metabolism 2
zma00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 5
osa03082 ATP-dependent chromatin remodeling 3
osa00230 Purine metabolism 2
osa00240 Pyrimidine metabolism 2
osa00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 10
tae00230 Purine metabolism 6
tae00240 Pyrimidine metabolism 6
tae00480 Glutathione metabolism 6
tae01232 Nucleotide metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 9
tae03410 Base excision repair 6
tae03420 Nucleotide excision repair 6
tae03430 Mismatch repair 6
tae00230 Purine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 11
tae03410 Base excision repair 7
tae03420 Nucleotide excision repair 7
tae03430 Mismatch repair 6
tae00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 4
bdi03030 DNA replication 3
bdi03410 Base excision repair 2
bdi03420 Nucleotide excision repair 2
bdi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 11
ath03420 Nucleotide excision repair 4
ath03430 Mismatch repair 4
ath03082 ATP-dependent chromatin remodeling 4
ath03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 13
ath03420 Nucleotide excision repair 5
ath03430 Mismatch repair 5
ath03440 Homologous recombination 3
ath03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00240 Pyrimidine metabolism 6
gma01232 Nucleotide metabolism 6
gma03030 DNA replication 5
gma00230 Purine metabolism 4
gma00480 Glutathione metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 6
gma00240 Pyrimidine metabolism 5
gma01232 Nucleotide metabolism 5
gma03420 Nucleotide excision repair 4
gma03430 Mismatch repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 9
sly00240 Pyrimidine metabolism 3
sly01232 Nucleotide metabolism 3
sly03420 Nucleotide excision repair 3
sly03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 8
bra03420 Nucleotide excision repair 2
bra03430 Mismatch repair 2
bra03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03030 DNA replication 5
vvi03420 Nucleotide excision repair 4
vvi00240 Pyrimidine metabolism 3
vvi01232 Nucleotide metabolism 3
vvi03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 11
ppo03420 Nucleotide excision repair 4
ppo03430 Mismatch repair 3
ppo03410 Base excision repair 3
ppo00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 8
ppo03410 Base excision repair 3
ppo03420 Nucleotide excision repair 3
ppo00240 Pyrimidine metabolism 2
ppo01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 9
mtr03420 Nucleotide excision repair 2
mtr03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 7
ghi03420 Nucleotide excision repair 7
ghi03430 Mismatch repair 7
ghi03410 Base excision repair 4
ghi03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 7
ghi03420 Nucleotide excision repair 7
ghi03410 Base excision repair 6
ghi03430 Mismatch repair 6
ghi00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 6
ghi03420 Nucleotide excision repair 6
ghi03430 Mismatch repair 6
ghi03410 Base excision repair 4
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 7
bna03420 Nucleotide excision repair 4
bna03430 Mismatch repair 4
bna03440 Homologous recombination 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 10
bna03420 Nucleotide excision repair 7
bna03430 Mismatch repair 7
bna03410 Base excision repair 5
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 10
bna03420 Nucleotide excision repair 7
bna03430 Mismatch repair 7
bna03410 Base excision repair 5
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 9
sot03410 Base excision repair 3
sot03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 9
cit03030 DNA replication 3
cit00230 Purine metabolism 2
cit00240 Pyrimidine metabolism 2
cit00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
nta03082 ATP-dependent chromatin remodeling 2
nta03083 Polycomb repressive complex 2
nta03030 DNA replication 2
nta03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
nta03082 ATP-dependent chromatin remodeling 2
nta03083 Polycomb repressive complex 2
nta03030 DNA replication 2
nta03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 8
cre03420 Nucleotide excision repair 2
cre03430 Mismatch repair 2
cre00240 Pyrimidine metabolism 2
cre01232 Nucleotide metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 542425 542357 8056408 4331062 123053869 123128871 123146016 123427208 123406159 100843467 817506 837249 100817651 548079 544248 103843463 103868024 100248466 7478554 7481501 25490757 121215525 107950214 121212680 125578622 106451525 106451515 102581875 102627400 107778290 107779602 5728769
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