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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-r.6   542012   translocon of outer membrane of chloroplast35 
 zma-u.5   542012   translocon of outer membrane of chloroplast35 
 zma-m.5   542012   translocon of outer membrane of chloroplast35 
 zma-u.5   542502   translocon at outer membrane of chloroplast34 
 sbi-r.1   110431641   translocase of chloroplast 34, chloroplastic-like 
 osa-u.5   4332203   translocase of chloroplast 34, chloroplastic 
 tae-r.2   123085212   translocase of chloroplast 34, chloroplastic 
 tae-r.2   123092820   translocase of chloroplast 34, chloroplastic 
 tae-r.2   123098110   translocase of chloroplast 34, chloroplastic 
 hvu-r.1   123449192   translocase of chloroplast 34, chloroplastic-like 
 bdi-r.1   100826381   translocase of chloroplast 34, chloroplastic 
 ath-u.5   TOC34   translocon at the outer envelope membrane of chloroplasts 34 
 ath-u.5   TOC33   translocon at the outer envelope membrane of chloroplasts 33 
 gma-u.5   100782594   translocase of chloroplast 34 
 gma-u.5   100787890   translocase of chloroplast 34-like 
 sly-u.5   101267995   translocase of chloroplast 34, chloroplastic 
 sly-u.5   101248855   translocase of chloroplast 34 
 bra-r.6   103855603   translocase of chloroplast 34, chloroplastic 
 bra-r.6   103847234   translocase of chloroplast 34, chloroplastic 
 bra-r.6   103844601   translocase of chloroplast 33, chloroplastic 
 vvi-u.5   100251020   translocase of chloroplast 34, chloroplastic 
 vvi-u.5   100257906   translocase of chloroplast 34, chloroplastic 
 ppo-u.5   7487761   translocase of chloroplast 33, chloroplastic 
 ppo-u.5   7486826   translocase of chloroplast 33, chloroplastic 
 mtr-u.5   11438484   translocase of chloroplast 34 
 mtr-u.5   120579439   translocase of chloroplast 34 
 ghi-r.1   107924043   translocase of chloroplast 33, chloroplastic 
 ghi-r.1   107912266   translocase of chloroplast 33, chloroplastic 
 ghi-r.1   107910505   translocase of chloroplast 33, chloroplastic 
 bna-r.1   106442694   translocase of chloroplast 34, chloroplastic 
 bna-r.1   106441331   translocase of chloroplast 34, chloroplastic 
 bna-r.1   106419283   translocase of chloroplast 34, chloroplastic 
 sot-r.1   102585579   translocase of chloroplast 34-like 
 sot-r.1   102593389   translocase of chloroplast 34, chloroplastic 
 cit-r.1   102610540   translocase of chloroplast 33, chloroplastic 
 cit-r.1   102609876   translocase of chloroplast 34, chloroplastic 
 nta-r.1   107781341   translocase of chloroplast 34-like 
 nta-r.1   107780482   translocase of chloroplast 34 
 nta-r.1   107806193   translocase of chloroplast 34 
 cre-r.1   CHLRE_06g252200v5   uncharacterized protein 

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Top 50 coexpressed genes to 542012 (zma-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 542012 (zma-r.6 coexpression data)

CoexMap"542012"


zmaLOC542012 | Entrez gene ID : 542012      
Species zma sbi osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 4 1 1 3 1 1 2 2 2 3 2 2 2 3 3 2 2 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006886 [list] [network] intracellular protein transport  (303 genes)  IEA  
GO CC
GO:0009707 [list] [network] chloroplast outer membrane  (31 genes)  IEA  
GO MF
GO:0015450 [list] [network] protein-transporting ATPase activity  (2 genes)  IEA  
GO:0005525 [list] [network] GTP binding  (315 genes)  IEA  
Protein NP_001105129.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  chlo 2,  golg 2,  cyto_plas 2  (predict for NP_001105129.2)
Subcellular
localization
TargetP
other 4  (predict for NP_001105129.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-r.6
for
542012
zma-u.5
for
542012
zma-m.5
for
542012
zma-u.5
for
542502
sbi-r.1
for
110431641
osa-u.5
for
4332203
tae-r.2
for
123085212
tae-r.2
for
123092820
tae-r.2
for
123098110
hvu-r.1
for
123449192
bdi-r.1
for
100826381
ath-u.5
for
TOC34
ath-u.5
for
TOC33
gma-u.5
for
100782594
gma-u.5
for
100787890
sly-u.5
for
101267995
sly-u.5
for
101248855
bra-r.6
for
103855603
bra-r.6
for
103847234
bra-r.6
for
103844601
vvi-u.5
for
100251020
vvi-u.5
for
100257906
ppo-u.5
for
7487761
ppo-u.5
for
7486826
mtr-u.5
for
11438484
mtr-u.5
for
120579439
ghi-r.1
for
107924043
ghi-r.1
for
107912266
ghi-r.1
for
107910505
bna-r.1
for
106442694
bna-r.1
for
106441331
bna-r.1
for
106419283
sot-r.1
for
102585579
sot-r.1
for
102593389
cit-r.1
for
102610540
cit-r.1
for
102609876
nta-r.1
for
107781341
nta-r.1
for
107780482
nta-r.1
for
107806193
cre-r.1
for
CHLRE_06g252200v5


Ortholog ID: 4118
Species zma zma sbi osa tae tae tae hvu bdi ath ath gma gma sly sly bra bra bra vvi vvi ppo ppo mtr mtr ghi ghi ghi bna bna bna sot sot cit cit nta nta nta cre
Symbol LOC542012 LOC542502 LOC110431641 LOC4332203 LOC123085212 LOC123092820 LOC123098110 LOC123449192 LOC100826381 TOC34 TOC33 LOC100782594 LOC100787890 LOC101267995 LOC101248855 LOC103855603 LOC103847234 LOC103843762 LOC100251020 LOC100257906 LOC7487761 LOC7486826 LOC11438484 LOC120579439 LOC107924043 LOC107912266 LOC107910505 LOC106419283 LOC106397213 LOC106370920 LOC102585579 LOC102593389 LOC102610540 LOC102609876 LOC107781341 LOC107780482 LOC107806193 CHLRE_06g252200v5
Function* translocon of outer membrane of chloroplast35 translocon at outer membrane of chloroplast34 translocase of chloroplast 34, chloroplastic-like translocase of chloroplast 34, chloroplastic translocase of chloroplast 34, chloroplastic translocase of chloroplast 34, chloroplastic translocase of chloroplast 34, chloroplastic translocase of chloroplast 34, chloroplastic-like translocase of chloroplast 34, chloroplastic translocon at the outer envelope membrane of chloroplasts 34 translocon at the outer envelope membrane of chloroplasts 33 translocase of chloroplast 34 translocase of chloroplast 34-like translocase of chloroplast 34, chloroplastic translocase of chloroplast 34 translocase of chloroplast 34, chloroplastic translocase of chloroplast 34, chloroplastic translocase of chloroplast 33, chloroplastic translocase of chloroplast 34, chloroplastic translocase of chloroplast 34, chloroplastic translocase of chloroplast 33, chloroplastic translocase of chloroplast 33, chloroplastic translocase of chloroplast 34 translocase of chloroplast 34 translocase of chloroplast 33, chloroplastic translocase of chloroplast 33, chloroplastic translocase of chloroplast 33, chloroplastic translocase of chloroplast 34, chloroplastic translocase of chloroplast 33, chloroplastic translocase of chloroplast 33, chloroplastic translocase of chloroplast 34-like translocase of chloroplast 34, chloroplastic translocase of chloroplast 33, chloroplastic translocase of chloroplast 34, chloroplastic translocase of chloroplast 34-like translocase of chloroplast 34 translocase of chloroplast 34 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00290 Valine, leucine and isoleucine biosynthesis 2
zma00770 Pantothenate and CoA biosynthesis 2
zma01210 2-Oxocarboxylic acid metabolism 2
zma01230 Biosynthesis of amino acids 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 3
osa03040 Spliceosome 2
osa04144 Endocytosis 2
osa01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
bdi00970 Aminoacyl-tRNA biosynthesis 2
bdi04141 Protein processing in endoplasmic reticulum 2
bdi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 6
ath03060 Protein export 2
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
gma00541 Biosynthesis of various nucleotide sugars 2
gma01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 12
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 6
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 8
vvi03040 Spliceosome 3
vvi03013 Nucleocytoplasmic transport 2
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 4
ppo00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00220 Arginine biosynthesis 2
mtr00240 Pyrimidine metabolism 2
mtr00250 Alanine, aspartate and glutamate metabolism 2
mtr01240 Biosynthesis of cofactors 2
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 3
mtr01240 Biosynthesis of cofactors 2
mtr04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 6
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 8
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 5
sot04141 Protein processing in endoplasmic reticulum 2
sot00290 Valine, leucine and isoleucine biosynthesis 2
sot00770 Pantothenate and CoA biosynthesis 2
sot01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 6
cit03040 Spliceosome 4
cit04122 Sulfur relay system 2
cit04120 Ubiquitin mediated proteolysis 2
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 3
cit00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01230 Biosynthesis of amino acids 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 542012 542502 110431641 4332203 123085212 123092820 123098110 123449192 100826381 830382 839248 100782594 100787890 101267995 101248855 103855603 103847234 103843762 100251020 100257906 7487761 7486826 11438484 120579439 107924043 107912266 107910505 106419283 106397213 106370920 102585579 102593389 102610540 102609876 107781341 107780482 107806193 5722177
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