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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-r.6   542257   zea apetala homolog 1 
 zma-u.5   542257   zea apetala homolog 1 
 zma-m.5   542257   zea apetala homolog 1 
 zma-u.5   541765   MADS3 
 zma-u.5   542032   m15 protein 
 zma-u.5   542041   m4 protein 
 sbi-r.1   8085925   MADS-box transcription factor 14 
 sbi-r.1   8054531   MADS-box transcription factor 15 
 osa-u.5   4342214   MADS-box transcription factor 15-like 
 osa-u.5   4334140   MADS-box transcription factor 14-like 
 tae-r.2   123052951   MADS-box transcription factor 15 
 tae-r.2   543351   mads11 protein 
 tae-r.2   780641   MADS-box transcription factor 15 
 hvu-r.1   123452274   MADS-box transcription factor 14-like 
 bdi-r.1   100842079   MADS-box transcription factor 14-like 
 bdi-r.1   100845222   MADS-box transcription factor 15-like 
 ath-u.5   AP1   K-box region and MADS-box transcription factor family protein 
 ath-u.5   AGL8   AGAMOUS-like 8 
 gma-u.5   100805348   truncated transcription factor CAULIFLOWER A 
 gma-u.5   AP1   MADS-box transcription factor 
 gma-u.5   FULC   MADS-box protein FULc 
 sly-u.5   FUL2   transcription factor FRUITFULL 
 bra-r.6   103860551   agamous-like MADS-box protein AGL8 homolog 
 bra-r.6   103854924   agamous-like MADS-box protein AGL8 
 vvi-u.5   100257072   truncated transcription factor CAULIFLOWER A 
 vvi-u.5   VFUL-L   FUL-like protein 
 vvi-u.5   AP1   apetala1 
 ppo-u.5   7468138   truncated transcription factor CAULIFLOWER A 
 mtr-u.5   25488419   truncated transcription factor CAULIFLOWER A 
 ghi-r.1   107893801   truncated transcription factor CAULIFLOWER A-like 
 ghi-r.1   107949769   truncated transcription factor CAULIFLOWER A 
 sot-r.1   FUL1   Agamous-like MADS-box protein AGL8 homolog 
 sot-r.1   FUL2   agamous-like MADS-box protein AGL8 homolog 
 cit-r.1   102615519   truncated transcription factor CAULIFLOWER A 
 cit-r.1   102612359   truncated transcription factor CAULIFLOWER A 
 cit-r.1   AP1   APETALA1 
 nta-r.1   107815093   agamous-like MADS-box protein AGL8 homolog 

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Top 50 coexpressed genes to 542257 (zma-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 542257 (zma-r.6 coexpression data)

CoexMap"542257"


zmaLOC542257 | Entrez gene ID : 542257      
Species zma sbi osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi sot cit nta cre bna
Paralog 6 2 2 3 1 2 2 3 1 2 3 1 1 2 2 3 1 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (124 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (3371 genes)  IEA  
GO MF
GO:0000977 [list] [network] RNA polymerase II transcription regulatory region sequence-specific DNA binding  (246 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (663 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1355 genes)  IEA  
Protein NP_001105333.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001105333.2)
Subcellular
localization
TargetP
other 6,  mito 4  (predict for NP_001105333.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-r.6
for
542257
zma-u.5
for
542257
zma-m.5
for
542257
zma-u.5
for
541765
zma-u.5
for
542032
zma-u.5
for
542041
sbi-r.1
for
8085925
sbi-r.1
for
8054531
osa-u.5
for
4342214
osa-u.5
for
4334140
tae-r.2
for
123052951
tae-r.2
for
543351
tae-r.2
for
780641
hvu-r.1
for
123452274
bdi-r.1
for
100842079
bdi-r.1
for
100845222
ath-u.5
for
AP1
ath-u.5
for
AGL8
gma-u.5
for
100805348
gma-u.5
for
AP1
gma-u.5
for
FULC
sly-u.5
for
FUL2
bra-r.6
for
103860551
bra-r.6
for
103854924
vvi-u.5
for
100257072
vvi-u.5
for
VFUL-L
vvi-u.5
for
AP1
ppo-u.5
for
7468138
mtr-u.5
for
25488419
ghi-r.1
for
107893801
ghi-r.1
for
107949769
sot-r.1
for
FUL1
sot-r.1
for
FUL2
cit-r.1
for
102615519
cit-r.1
for
102612359
cit-r.1
for
AP1
nta-r.1
for
107815093


Ortholog ID: 1094
Species zma zma zma sbi sbi osa osa tae tae tae hvu bdi bdi ath ath gma sly sly bra vvi vvi vvi ppo ppo mtr ghi bna bna sot sot cit cit cit nta
Symbol LOC542257 LOC541765 LOC542032 LOC8085925 LOC8054531 LOC4342214 LOC4334140 LOC543351 LOC780641 LOC543103 LOC123452274 LOC100842079 LOC100845222 AP1 AGL8 LOC100784742 FUL2 FUL1 LOC103860551 LOC100257072 VFUL-L AP1 LOC7468138 LOC7484716 LOC25488419 LOC107893801 LOC106428477 LOC106439964 FUL1 FUL2 LOC102615519 LOC102612359 AP1 FUL1
Function* zea apetala homolog 1 MADS3 m15 protein MADS-box transcription factor 14 MADS-box transcription factor 15 MADS-box transcription factor 15-like MADS-box transcription factor 14-like mads11 protein MADS-box transcription factor 15 MADS-box transcription factor 14 MADS-box transcription factor 14-like MADS-box transcription factor 14-like MADS-box transcription factor 15-like K-box region and MADS-box transcription factor family protein AGAMOUS-like 8 truncated transcription factor CAULIFLOWER A transcription factor FRUITFULL agamous-like MADS-box protein AGL8 homolog agamous-like MADS-box protein AGL8 homolog truncated transcription factor CAULIFLOWER A FUL-like protein apetala1 truncated transcription factor CAULIFLOWER A truncated transcription factor CAULIFLOWER A truncated transcription factor CAULIFLOWER A truncated transcription factor CAULIFLOWER A-like floral homeotic protein APETALA 1 agamous-like MADS-box protein AGL8 homolog Agamous-like MADS-box protein AGL8 homolog agamous-like MADS-box protein AGL8 homolog truncated transcription factor CAULIFLOWER A truncated transcription factor CAULIFLOWER A APETALA1 agamous-like MADS-box protein AGL8 homolog
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04142 Lysosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00540 Lipopolysaccharide biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00260 Glycine, serine and threonine metabolism 2
sot00350 Tyrosine metabolism 2
sot00360 Phenylalanine metabolism 2
sot00410 beta-Alanine metabolism 2
sot00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04712 Circadian rhythm - plant 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 542257 541765 542032 8085925 8054531 4342214 4334140 543351 780641 543103 123452274 100842079 100845222 843244 836212 100784742 543887 543839 103860551 100257072 100232953 100232952 7468138 7484716 25488419 107893801 106428477 106439964 102577795 102583048 102615519 102612359 102578018 107774027
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