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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   542257   zea apetala homolog 1 
 zma-r.6   542257   zea apetala homolog 1 
 zma-m.5   542257   zea apetala homolog 1 
 zma-u.5   541765   MADS3 
 zma-u.5   542032   m15 protein 
 zma-u.5   542041   m4 protein 
 osa-u.5   4342214   MADS-box transcription factor 15-like 
 osa-u.5   4334140   MADS-box transcription factor 14-like 
 ath-u.5   AP1   K-box region and MADS-box transcription factor family protein 
 ath-u.5   AGL8   AGAMOUS-like 8 
 gma-u.5   100805348   truncated transcription factor CAULIFLOWER A 
 gma-u.5   AP1   MADS-box transcription factor 
 gma-u.5   FULC   MADS-box protein FULc 
 sly-u.5   FUL2   transcription factor FRUITFULL 
 vvi-u.5   100257072   truncated transcription factor CAULIFLOWER A 
 vvi-u.5   VFUL-L   FUL-like protein 
 vvi-u.5   AP1   apetala1 
 ppo-u.5   7468138   truncated transcription factor CAULIFLOWER A 
 mtr-u.5   25488419   truncated transcription factor CAULIFLOWER A 

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Top 50 coexpressed genes to 542257 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 542257 (zma-u.5 coexpression data)

CoexMap"542257"


zmaLOC542257 | Entrez gene ID : 542257      
Species zma osa ath gma sly vvi ppo mtr sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 6 2 2 3 1 3 1 1 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (124 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (3371 genes)  IEA  
GO MF
GO:0000977 [list] [network] RNA polymerase II transcription regulatory region sequence-specific DNA binding  (246 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (663 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1355 genes)  IEA  
Protein NP_001105333.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001105333.2)
Subcellular
localization
TargetP
other 6,  mito 4  (predict for NP_001105333.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
542257

.
zma-r.6
for
542257

.
zma-m.5
for
542257

.
zma-u.5
for
541765

.
zma-u.5
for
542032

.
zma-u.5
for
542041

.
osa-u.5
for
4342214

.
osa-u.5
for
4334140

.
ath-u.5
for
AP1

.
ath-u.5
for
AGL8

.
gma-u.5
for
100805348

.
gma-u.5
for
AP1

.
gma-u.5
for
FULC

.
sly-u.5
for
FUL2

.
vvi-u.5
for
100257072

.
vvi-u.5
for
VFUL-L

.
vvi-u.5
for
AP1

.
ppo-u.5
for
7468138

.
mtr-u.5
for
25488419

.


Ortholog ID: 1094
Species ath sly osa osa zma zma vvi vvi ppo ppo mtr tae tae bna sbi sbi sot sot cit cit bdi bdi
Symbol AGL8 FUL1 LOC4334140 LOC4342214 LOC542257 LOC541765 LOC100257072 AP1 LOC7484716 LOC7468138 LOC25488419 LOC780641 LOC543351 LOC106439964 LOC8054531 LOC8085925 FUL2 FUL1 AP1 LOC102612359 LOC100842079 LOC100845222
Function* AGAMOUS-like 8 agamous-like MADS-box protein AGL8 homolog MADS-box transcription factor 14-like MADS-box transcription factor 15-like zea apetala homolog 1 MADS3 truncated transcription factor CAULIFLOWER A apetala1 truncated transcription factor CAULIFLOWER A truncated transcription factor CAULIFLOWER A truncated transcription factor CAULIFLOWER A MADS-box transcription factor 15 mads11 protein agamous-like MADS-box protein AGL8 homolog MADS-box transcription factor 15 MADS-box transcription factor 14 agamous-like MADS-box protein AGL8 homolog Agamous-like MADS-box protein AGL8 homolog APETALA1 truncated transcription factor CAULIFLOWER A MADS-box transcription factor 14-like MADS-box transcription factor 15-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04142 Lysosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00260 Glycine, serine and threonine metabolism 2
sot00350 Tyrosine metabolism 2
sot00360 Phenylalanine metabolism 2
sot00410 beta-Alanine metabolism 2
sot00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04712 Circadian rhythm - plant 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836212 543839 4334140 4342214 542257 541765 100257072 100232952 7484716 7468138 25488419 780641 543351 106439964 8054531 8085925 102583048 102577795 102578018 102612359 100842079 100845222
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