ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-r.6	732819	viviparous14
zma-u.5	732819	viviparous14
zma-u.5	103648268	9-cis-epoxycarotenoid dioxygenase NCED4, chloroplastic
zma-u.5	103626043	9-cis-epoxycarotenoid dioxygenase 1, chloroplastic-like
zma-u.5	100281136	uncharacterized LOC100281136
sbi-r.1	8062208	9-cis-epoxycarotenoid dioxygenase 1, chloroplastic
osa-u.5	4333566	9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like
osa-u.5	4342424	9-cis-epoxycarotenoid dioxygenase NCED4, chloroplastic
osa-u.5	9270250	9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic-like
tae-r.2	123113194	9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic
tae-r.2	123122716	9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic
hvu-r.1	123395880	9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic-like
hvu-r.1	123452108	9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like
bdi-r.1	100822305	9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic
ath-u.5	NCED3	nine-cis-epoxycarotenoid dioxygenase 3
gma-u.5	NCED2	9-cis-epoxycarotenoid dioxygenase 2
gma-u.5	100780284	probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic-like
gma-u.5	100777166	9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic
sly-u.5	NCED1	9-cis-epoxycarotenoid dioxygenase
sly-u.5	NCED2	9-cis-epoxycarotenoid dioxygenase 2
bra-r.6	103859576	9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like
bra-r.6	103840429	probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic
vvi-u.5	NCED1	9-cis-epoxycarotenoid dioxygenase 1
vvi-u.5	NCED2	9-cis-epoxycarotenoid dioxygenase 2
vvi-u.5	100244362	9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic
ppo-u.5	7472358	9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic
mtr-u.5	120577706	9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic
mtr-u.5	25487063	9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic
ghi-r.1	107942317	9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic
ghi-r.1	107901883	9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic
ghi-r.1	107905887	9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic
sot-r.1	102577733	9-cis-epoxy-carotenoid dioxygenase 2
sot-r.1	102577783	9-cis-epoxy-carotenoid dioxygenase 1
cit-r.1	NCED	putative 9-cis-epoxycarotenoid dioxygenase 3
cit-r.1	102578070	9-cis-epoxycarotenoid dioxygenase 2
nta-r.1	107822968	probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic
nta-r.1	107814412	9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic-like

Top 50 coexpressed genes to 732819 (zma-r.6 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 732819 (zma-r.6 coexpression data)

CoexMap"732819"

[Cytoscape]

Annotation

functional annotation

KEGG

zma00906 [list] [network] Carotenoid biosynthesis (50 genes)

GO BP

GO:0016121 [list] [network] carotene catabolic process

(17 genes)

IEA

GO CC

GO:0009570 [list] [network] chloroplast stroma

(118 genes)

IEA

GO MF

GO:0010436 [list] [network] carotenoid dioxygenase activity

(17 genes)

IEA

Protein

NP_001105902.3 [sequence] [blastp]

Subcellular
localization
wolf

chlo 7, mito 3

(predict for NP_001105902.3)

Subcellular
localization
TargetP

chlo 7, mito 3

(predict for NP_001105902.3)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-r.6 for 732819	zma-u.5 for 732819	zma-u.5 for 103648268	zma-u.5 for 103626043	zma-u.5 for 100281136	sbi-r.1 for 8062208	osa-u.5 for 4333566	osa-u.5 for 4342424	osa-u.5 for 9270250	tae-r.2 for 123113194	tae-r.2 for 123122716	hvu-r.1 for 123395880	hvu-r.1 for 123452108	bdi-r.1 for 100822305	ath-u.5 for NCED3	gma-u.5 for NCED2	gma-u.5 for 100780284	gma-u.5 for 100777166	sly-u.5 for NCED1	sly-u.5 for NCED2	bra-r.6 for 103859576	bra-r.6 for 103840429	vvi-u.5 for NCED1	vvi-u.5 for NCED2	vvi-u.5 for 100244362	ppo-u.5 for 7472358	mtr-u.5 for 120577706	mtr-u.5 for 25487063	ghi-r.1 for 107942317	ghi-r.1 for 107901883	ghi-r.1 for 107905887	sot-r.1 for 102577733	sot-r.1 for 102577783	cit-r.1 for NCED	cit-r.1 for 102578070	nta-r.1 for 107822968	nta-r.1 for 107814412

Ortholog

Ortholog ID: 987

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

NCED3

NCED2

LOC100777166

LOC100814399

NCED1

NCED2

LOC103859576

LOC103870025

NCED1

NCED2

NCED

Function^*

9-cis-epoxycarotenoid dioxygenase NCED4, chloroplastic

uncharacterized LOC100281136

uncharacterized LOC100281391

9-cis-epoxycarotenoid dioxygenase 1, chloroplastic

9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like

9-cis-epoxycarotenoid dioxygenase NCED4, chloroplastic

9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic-like

9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic

9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic

9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic-like

9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like

9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic

nine-cis-epoxycarotenoid dioxygenase 3

9-cis-epoxycarotenoid dioxygenase 2

9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic

9-cis-epoxycarotenoid dioxygenase

9-cis-epoxycarotenoid dioxygenase 2

9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like

9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic

9-cis-epoxycarotenoid dioxygenase 1

9-cis-epoxycarotenoid dioxygenase 2

9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic

9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic

9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic

9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic

9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic

9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like

9-cis-epoxy-carotenoid dioxygenase 2

9-cis-epoxy-carotenoid dioxygenase 1

putative 9-cis-epoxycarotenoid dioxygenase 3

9-cis-epoxycarotenoid dioxygenase 2

probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic

9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic-like

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	5
zma04016	MAPK signaling pathway - plant	3
zma04075	Plant hormone signal transduction	3
zma00906	Carotenoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	8
zma04016	MAPK signaling pathway - plant	7
zma00906	Carotenoid biosynthesis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00906	Carotenoid biosynthesis	6
zma04016	MAPK signaling pathway - plant	5
zma04075	Plant hormone signal transduction	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04016	MAPK signaling pathway - plant	3
sbi04075	Plant hormone signal transduction	3
sbi00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04075	Plant hormone signal transduction	7
osa04016	MAPK signaling pathway - plant	5
osa00906	Carotenoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04075	Plant hormone signal transduction	3
osa04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00906	Carotenoid biosynthesis	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00906	Carotenoid biosynthesis	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00906	Carotenoid biosynthesis	9
tae04016	MAPK signaling pathway - plant	6
tae04075	Plant hormone signal transduction	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04016	MAPK signaling pathway - plant	2
hvu04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	7
bdi04016	MAPK signaling pathway - plant	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04016	MAPK signaling pathway - plant	5
ath04075	Plant hormone signal transduction	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00906	Carotenoid biosynthesis	2
gma00902	Monoterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04016	MAPK signaling pathway - plant	3
gma04075	Plant hormone signal transduction	3
gma00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	6
sly04016	MAPK signaling pathway - plant	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00500	Starch and sucrose metabolism	4
sly00520	Amino sugar and nucleotide sugar metabolism	2
sly01250	Biosynthesis of nucleotide sugars	2
sly00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04016	MAPK signaling pathway - plant	4
bra04075	Plant hormone signal transduction	4
bra00906	Carotenoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04016	MAPK signaling pathway - plant	5
bra04075	Plant hormone signal transduction	5
bra00906	Carotenoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04016	MAPK signaling pathway - plant	5
vvi04075	Plant hormone signal transduction	5
vvi00906	Carotenoid biosynthesis	4
vvi00052	Galactose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04016	MAPK signaling pathway - plant	4
vvi04075	Plant hormone signal transduction	4
vvi00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00906	Carotenoid biosynthesis	3
ppo04016	MAPK signaling pathway - plant	2
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	5
mtr04016	MAPK signaling pathway - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00906	Carotenoid biosynthesis	6
ghi04075	Plant hormone signal transduction	6
ghi04016	MAPK signaling pathway - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00906	Carotenoid biosynthesis	6
ghi04075	Plant hormone signal transduction	6
ghi04016	MAPK signaling pathway - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00906	Carotenoid biosynthesis	5
ghi00908	Zeatin biosynthesis	4
ghi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00906	Carotenoid biosynthesis	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04016	MAPK signaling pathway - plant	2
sot04075	Plant hormone signal transduction	2
sot00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	5
sot04016	MAPK signaling pathway - plant	4
sot00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04016	MAPK signaling pathway - plant	3
cit04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00270	Cysteine and methionine metabolism	4
nta00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00270	Cysteine and methionine metabolism	4
nta00906	Carotenoid biosynthesis	2

Expression

Expression pattern

Entrez Gene ID^*

103648268

100281136

100281391

8062208

4333566

4342424

9270250

123122716

123104904

123110233

123395880

123452108

100822305

820667

100797882

100777166

100814399

544163

100316877

103859576

103870025

100232942

100232943

100244362

18095516

120577706

25487063

107905887

107914792

107909170

106423568

102577733

102577783

102578064

102578070

107822968

107814412

The preparation time of this page was 0.2 [sec].


Species	zma	sbi	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	sot	cit	nta	cre	bna
Paralog	5	1	3	2	2	1	1	3	2	2	3	1	2	3	2	2	2	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 732819 (zma-r.6 coexpression data)

Top 50 enrichment test to 732819 (zma-r.6 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**