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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   732819   viviparous14 
 zma-r.6   732819   viviparous14 
 zma-u.5   103648268   9-cis-epoxycarotenoid dioxygenase NCED4, chloroplastic 
 zma-u.5   103626043   9-cis-epoxycarotenoid dioxygenase 1, chloroplastic-like 
 zma-u.5   100281136   uncharacterized LOC100281136 
 osa-u.5   4333566   9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like 
 osa-u.5   4342424   9-cis-epoxycarotenoid dioxygenase NCED4, chloroplastic 
 osa-u.5   9270250   9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic-like 
 ath-u.5   NCED3   nine-cis-epoxycarotenoid dioxygenase 3 
 gma-u.5   NCED2   9-cis-epoxycarotenoid dioxygenase 2 
 gma-u.5   100780284   probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic-like 
 gma-u.5   100777166   9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 
 sly-u.5   NCED1   9-cis-epoxycarotenoid dioxygenase 
 sly-u.5   NCED2   9-cis-epoxycarotenoid dioxygenase 2 
 vvi-u.5   NCED1   9-cis-epoxycarotenoid dioxygenase 1 
 vvi-u.5   NCED2   9-cis-epoxycarotenoid dioxygenase 2 
 vvi-u.5   100244362   9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic 
 ppo-u.5   7472358   9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 
 mtr-u.5   120577706   9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic 
 mtr-u.5   25487063   9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 

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Top 50 coexpressed genes to 732819 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 732819 (zma-u.5 coexpression data)

CoexMap"732819"


zmaLOC732819 | Entrez gene ID : 732819      
Species zma osa ath gma sly vvi ppo mtr sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 5 3 1 3 2 3 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG zma00906 [list] [network] Carotenoid biosynthesis (50 genes)
GO BP
GO:0016121 [list] [network] carotene catabolic process  (17 genes)  IEA  
GO CC
GO:0009570 [list] [network] chloroplast stroma  (118 genes)  IEA  
GO MF
GO:0010436 [list] [network] carotenoid dioxygenase activity  (17 genes)  IEA  
Protein NP_001105902.3 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  mito 3  (predict for NP_001105902.3)
Subcellular
localization
TargetP
chlo 7,  mito 3  (predict for NP_001105902.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
732819

.
zma-r.6
for
732819

.
zma-u.5
for
103648268

.
zma-u.5
for
103626043

.
zma-u.5
for
100281136

.
osa-u.5
for
4333566

.
osa-u.5
for
4342424

.
osa-u.5
for
9270250

.
ath-u.5
for
NCED3

.
gma-u.5
for
NCED2

.
gma-u.5
for
100780284

.
gma-u.5
for
100777166

.
sly-u.5
for
NCED1

.
sly-u.5
for
NCED2

.
vvi-u.5
for
NCED1

.
vvi-u.5
for
NCED2

.
vvi-u.5
for
100244362

.
ppo-u.5
for
7472358

.
mtr-u.5
for
120577706

.
mtr-u.5
for
25487063

.


Ortholog ID: 987
Species gma gma sly osa osa zma zma bra vvi vvi mtr mtr tae tae hvu hvu ghi ghi bna sbi sot cit bdi nta nta
Symbol LOC100814399 NCED2 NCED1 LOC4342424 LOC9270250 LOC103648268 LOC100281391 LOC103870025 LOC100244362 NCED1 LOC120577706 LOC25487063 LOC123122716 LOC123110233 LOC123395880 LOC123452108 LOC107914792 LOC107909170 LOC106423568 LOC8062208 LOC102577733 NCED LOC100822305 LOC107814412 LOC107822968
Function* 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 9-cis-epoxycarotenoid dioxygenase 2 9-cis-epoxycarotenoid dioxygenase 9-cis-epoxycarotenoid dioxygenase NCED4, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic-like 9-cis-epoxycarotenoid dioxygenase NCED4, chloroplastic uncharacterized LOC100281391 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic 9-cis-epoxycarotenoid dioxygenase 1 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic-like 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like 9-cis-epoxycarotenoid dioxygenase 1, chloroplastic 9-cis-epoxy-carotenoid dioxygenase 2 putative 9-cis-epoxycarotenoid dioxygenase 3 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic-like probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 2
gma00902 Monoterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 6
sly04016 MAPK signaling pathway - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 3
osa04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 5
zma04016 MAPK signaling pathway - plant 3
zma04075 Plant hormone signal transduction 3
zma00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00906 Carotenoid biosynthesis 6
zma04016 MAPK signaling pathway - plant 5
zma04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04016 MAPK signaling pathway - plant 5
bra04075 Plant hormone signal transduction 5
bra00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04016 MAPK signaling pathway - plant 5
vvi04075 Plant hormone signal transduction 5
vvi00906 Carotenoid biosynthesis 4
vvi00052 Galactose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 5
mtr04016 MAPK signaling pathway - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 9
tae04016 MAPK signaling pathway - plant 6
tae04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04016 MAPK signaling pathway - plant 2
hvu04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 6
ghi04075 Plant hormone signal transduction 6
ghi04016 MAPK signaling pathway - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 5
ghi00908 Zeatin biosynthesis 4
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04016 MAPK signaling pathway - plant 3
sbi04075 Plant hormone signal transduction 3
sbi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04016 MAPK signaling pathway - plant 2
sot04075 Plant hormone signal transduction 2
sot00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04016 MAPK signaling pathway - plant 3
cit04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 7
bdi04016 MAPK signaling pathway - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 4
nta00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 4
nta00906 Carotenoid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100814399 100797882 544163 4342424 9270250 103648268 100281391 103870025 100244362 100232942 120577706 25487063 123122716 123110233 123395880 123452108 107914792 107909170 106423568 8062208 102577733 102578064 100822305 107814412 107822968
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