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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   103640772   pentatricopeptide repeat-containing protein At5g04780, mitochondrial 
 zma-r.6   103640772   pentatricopeptide repeat-containing protein At5g04780, mitochondrial 
 sbi-r.1   8079838   pentatricopeptide repeat-containing protein At5g04780 
 tae-r.2   123190442   pentatricopeptide repeat-containing protein At5g04780, mitochondrial 
 tae-r.2   123054576   pentatricopeptide repeat-containing protein At5g04780, mitochondrial 
 tae-r.2   123046730   pentatricopeptide repeat-containing protein At5g04780, mitochondrial 
 ath-u.5   AT5G04780   Pentatricopeptide repeat (PPR) superfamily protein 
 sly-u.5   101245222   pentatricopeptide repeat-containing protein 
 mtr-u.5   25485552   pentatricopeptide repeat-containing protein At5g04780, mitochondrial 
 ghi-r.1   107941409   pentatricopeptide repeat-containing protein At5g04780, mitochondrial 
 sot-r.1   102597631   pentatricopeptide repeat-containing protein At5g04780 
 cit-r.1   102626818   pentatricopeptide repeat-containing protein At5g04780, mitochondrial 
 nta-r.1   107779420   pentatricopeptide repeat-containing protein At5g04780, mitochondrial-like 
 nta-r.1   107775155   pentatricopeptide repeat-containing protein At5g04780, mitochondrial-like 

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Top 50 coexpressed genes to 103640772 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103640772 (zma-u.5 coexpression data)

CoexMap"103640772"


zmaLOC103640772 | Entrez gene ID : 103640772    
Species zma sbi tae ath sly mtr ghi sot cit nta osa gma bra bna hvu ppo vvi cre bdi
Paralog 2 1 3 1 1 1 1 1 1 2 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (350 genes)  IEA  
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1549 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4389 genes)  IEA  
Protein XP_020401554.1 [sequence] [blastp]
XP_020401555.1 [sequence] [blastp]
XP_020401556.1 [sequence] [blastp]
XP_020401558.1 [sequence] [blastp]
XP_020401559.1 [sequence] [blastp]
XP_020401560.1 [sequence] [blastp]
XP_035819222.1 [sequence] [blastp]
Subcellular
localization
wolf
vacu 4,  plas 1,  golg 1,  golg_plas 1,  chlo 1,  nucl 1,  extr 1,  E.R. 1,  cysk_plas 1,  mito_plas 1,  cyto_plas 1  (predict for XP_020401554.1)
vacu 4,  plas 1,  golg 1,  golg_plas 1,  chlo 1,  nucl 1,  extr 1,  E.R. 1,  cysk_plas 1,  mito_plas 1,  cyto_plas 1  (predict for XP_020401555.1)
vacu 4,  plas 1,  golg 1,  golg_plas 1,  chlo 1,  nucl 1,  extr 1,  E.R. 1,  cysk_plas 1,  mito_plas 1,  cyto_plas 1  (predict for XP_020401556.1)
vacu 4,  plas 1,  extr 1,  golg 1,  golg_plas 1  (predict for XP_020401558.1)
chlo 4,  vacu 3,  extr 1,  nucl 1,  mito 1,  E.R. 1  (predict for XP_020401559.1)
cyto 4,  nucl 2,  E.R. 1,  cyto_pero 1,  E.R._plas 1  (predict for XP_020401560.1)
vacu 4,  plas 1,  golg 1,  golg_plas 1,  chlo 1,  nucl 1,  extr 1,  E.R. 1,  cysk_plas 1,  mito_plas 1,  cyto_plas 1  (predict for XP_035819222.1)
Subcellular
localization
TargetP
scret 6  (predict for XP_020401554.1)
scret 6  (predict for XP_020401555.1)
scret 6  (predict for XP_020401556.1)
scret 6  (predict for XP_020401558.1)
other 5  (predict for XP_020401559.1)
other 7  (predict for XP_020401560.1)
scret 6  (predict for XP_035819222.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
103640772
zma-r.6
for
103640772
sbi-r.1
for
8079838
tae-r.2
for
123190442
tae-r.2
for
123054576
tae-r.2
for
123046730
ath-u.5
for
AT5G04780
sly-u.5
for
101245222
mtr-u.5
for
25485552
ghi-r.1
for
107941409
sot-r.1
for
102597631
cit-r.1
for
102626818
nta-r.1
for
107779420
nta-r.1
for
107775155


Ortholog ID: 11726
Species zma sbi tae tae tae ath sly mtr ghi sot cit nta nta
Symbol LOC103640772 LOC8079838 LOC123190442 LOC123054576 LOC123046730 AT5G04780 LOC101245222 LOC25485552 LOC107941409 LOC102597631 LOC102626818 LOC107779420 LOC107775155
Function* pentatricopeptide repeat-containing protein At5g04780, mitochondrial pentatricopeptide repeat-containing protein At5g04780 pentatricopeptide repeat-containing protein At5g04780, mitochondrial pentatricopeptide repeat-containing protein At5g04780, mitochondrial pentatricopeptide repeat-containing protein At5g04780, mitochondrial Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At5g04780, mitochondrial pentatricopeptide repeat-containing protein At5g04780, mitochondrial pentatricopeptide repeat-containing protein At5g04780 pentatricopeptide repeat-containing protein At5g04780, mitochondrial pentatricopeptide repeat-containing protein At5g04780, mitochondrial-like pentatricopeptide repeat-containing protein At5g04780, mitochondrial-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103640772 8079838 123190442 123054576 123046730 830356 101245222 25485552 107941409 102597631 102626818 107779420 107775155
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