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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   542478   photosystem II subunit29 
 zma-r.6   542478   photosystem II subunit29 
 zma-m.5   542478   photosystem II subunit29 
 zma-u.5   100216729   Chlorophyll a-b binding protein CP29.1 chloroplastic 
 osa-u.5   4343583   chlorophyll a-b binding protein CP29.1, chloroplastic 
 ath-u.5   LHCB4.3   light harvesting complex photosystem II 
 ath-u.5   LHCB4.2   light harvesting complex photosystem II 
 ath-u.5   LHCB4.1   light harvesting complex photosystem II 
 gma-u.5   100820335   chlorophyll a-b binding protein CP29.3, chloroplastic 
 gma-u.5   100794604   chlorophyll a-b binding protein CP29.3, chloroplastic 
 gma-u.5   100785415   chlorophyll a-b binding protein CP29.2, chloroplastic-like 
 sly-u.5   101249002   chlorophyll a-b binding protein CP29.1, chloroplastic 
 vvi-u.5   100266604   chlorophyll a-b binding protein CP29.2, chloroplastic-like 
 ppo-u.5   7466067   chlorophyll a-b binding protein CP29.2, chloroplastic 
 ppo-u.5   7487313   chlorophyll a-b binding protein CP29.2, chloroplastic 
 ppo-u.5   7488015   chlorophyll a-b binding protein CP29.3, chloroplastic 
 mtr-u.5   11422473   chlorophyll a-b binding protein CP29.1, chloroplastic 
 mtr-u.5   11406674   chlorophyll a-b binding protein CP29.3, chloroplastic 

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Top 50 coexpressed genes to 542478 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 542478 (zma-u.5 coexpression data)

CoexMap"542478"


zmaLOC542478 | Entrez gene ID : 542478      
Species zma osa ath gma sly vvi ppo mtr cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 4 1 3 3 1 1 3 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG zma00196 [list] [network] Photosynthesis - antenna proteins (27 genes)
GO BP
GO:0009765 [list] [network] photosynthesis, light harvesting  (33 genes)  IEA  
GO CC
GO:0016020 [list] [network] membrane  (3751 genes)  IEA  
GO MF
Protein NP_001105502.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  extr 1,  vacu 1,  nucl 1,  pero 1,  golg 1,  E.R._vacu 1  (predict for NP_001105502.1)
Subcellular
localization
TargetP
chlo 6  (predict for NP_001105502.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
542478

.
zma-r.6
for
542478

.
zma-m.5
for
542478

.
zma-u.5
for
100216729

.
osa-u.5
for
4343583

.
ath-u.5
for
LHCB4.3

.
ath-u.5
for
LHCB4.2

.
ath-u.5
for
LHCB4.1

.
gma-u.5
for
100820335

.
gma-u.5
for
100794604

.
gma-u.5
for
100785415

.
sly-u.5
for
101249002

.
vvi-u.5
for
100266604

.
ppo-u.5
for
7466067

.
ppo-u.5
for
7487313

.
ppo-u.5
for
7488015

.
mtr-u.5
for
11422473

.
mtr-u.5
for
11406674

.


Ortholog ID: 4362
Species ath ath gma gma sly osa zma zma bra bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot cit cit bdi nta nta
Symbol LHCB4.2 LHCB4.1 LOC100785415 LOC100785180 LOC101249002 LOC4343583 LOC542478 LOC100216729 LOC103866983 LOC103870577 LOC100266604 LOC7488015 LOC7487313 LOC11422473 LOC11406674 LOC123188273 LOC123052387 LOC123425713 LOC107958067 LOC107891546 LOC106399822 LOC111206508 CHLRE_17g720250v5 LOC8081744 LOC102583949 LOC102577995 LOC102627462 LOC100834994 LOC107774251 LOC107798677
Function* light harvesting complex photosystem II light harvesting complex photosystem II chlorophyll a-b binding protein CP29.2, chloroplastic-like chlorophyll a-b binding protein CP29.2, chloroplastic chlorophyll a-b binding protein CP29.1, chloroplastic chlorophyll a-b binding protein CP29.1, chloroplastic photosystem II subunit29 Chlorophyll a-b binding protein CP29.1 chloroplastic chlorophyll a-b binding protein CP29.3, chloroplastic chlorophyll a-b binding protein CP29.2, chloroplastic chlorophyll a-b binding protein CP29.2, chloroplastic-like chlorophyll a-b binding protein CP29.3, chloroplastic chlorophyll a-b binding protein CP29.2, chloroplastic chlorophyll a-b binding protein CP29.1, chloroplastic chlorophyll a-b binding protein CP29.3, chloroplastic chlorophyll a-b binding protein CP29.2, chloroplastic chlorophyll a-b binding protein CP29.2, chloroplastic chlorophyll a-b binding protein CP29.2, chloroplastic-like chlorophyll a-b binding protein CP29.1, chloroplastic chlorophyll a-b binding protein CP29.1, chloroplastic chlorophyll a-b binding protein CP29.2, chloroplastic chlorophyll a-b binding protein CP29.2, chloroplastic-like uncharacterized protein chlorophyll a-b binding protein CP29.2, chloroplastic chlorophyll a-b binding protein CP29.1, chloroplastic-like chlorophyll a-b binding protein CP29.3, chloroplastic chlorophyll a-b binding protein CP29.1, chloroplastic chlorophyll a-b binding protein CP29.2, chloroplastic chlorophyll a-b binding protein CP29.1, chloroplastic-like chlorophyll a-b binding protein CP29.2, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00196 Photosynthesis - antenna proteins 10
ath00195 Photosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00196 Photosynthesis - antenna proteins 9
ath00195 Photosynthesis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00196 Photosynthesis - antenna proteins 13
gma00195 Photosynthesis 3
gma00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00196 Photosynthesis - antenna proteins 9
gma00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 11
sly00196 Photosynthesis - antenna proteins 5
sly00860 Porphyrin metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00196 Photosynthesis - antenna proteins 10
osa00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00196 Photosynthesis - antenna proteins 13
zma00195 Photosynthesis 4
zma00710 Carbon fixation by Calvin cycle 2
zma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00196 Photosynthesis - antenna proteins 11
zma00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00710 Carbon fixation by Calvin cycle 6
bra01200 Carbon metabolism 6
bra00195 Photosynthesis 5
bra00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00196 Photosynthesis - antenna proteins 9
bra00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00196 Photosynthesis - antenna proteins 10
vvi00195 Photosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00710 Carbon fixation by Calvin cycle 5
ppo01200 Carbon metabolism 5
ppo00195 Photosynthesis 3
ppo00010 Glycolysis / Gluconeogenesis 2
ppo00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00196 Photosynthesis - antenna proteins 7
ppo00195 Photosynthesis 4
ppo00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 9
mtr00196 Photosynthesis - antenna proteins 6
mtr00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 10
mtr00710 Carbon fixation by Calvin cycle 7
mtr00010 Glycolysis / Gluconeogenesis 4
mtr00030 Pentose phosphate pathway 4
mtr00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00196 Photosynthesis - antenna proteins 10
tae00195 Photosynthesis 8
tae00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00196 Photosynthesis - antenna proteins 14
tae00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00196 Photosynthesis - antenna proteins 10
hvu00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 10
ghi00196 Photosynthesis - antenna proteins 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00196 Photosynthesis - antenna proteins 8
ghi00195 Photosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00196 Photosynthesis - antenna proteins 10
bna00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00196 Photosynthesis - antenna proteins 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00195 Photosynthesis 5
cre00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00196 Photosynthesis - antenna proteins 12
sbi00195 Photosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 14
sot00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 11
cit00196 Photosynthesis - antenna proteins 6
cit00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00195 Photosynthesis 9
bdi00196 Photosynthesis - antenna proteins 9
bdi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 14
nta00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 14
nta00196 Photosynthesis - antenna proteins 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820043 830325 100785415 100785180 101249002 4343583 542478 100216729 103866983 103870577 100266604 7488015 7487313 11422473 11406674 123188273 123052387 123425713 107958067 107891546 106399822 111206508 5722671 8081744 102583949 102577995 102627462 100834994 107774251 107798677
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