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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   11406674   chlorophyll a-b binding protein CP29.3, chloroplastic 
 mtr-r.5   11406674   chlorophyll a-b binding protein CP29.3, chloroplastic 
 mtr-m.5   11406674   chlorophyll a-b binding protein CP29.3, chloroplastic 
 mtr-u.5   11422473   chlorophyll a-b binding protein CP29.1, chloroplastic 
 gma-u.5   100785415   chlorophyll a-b binding protein CP29.2, chloroplastic-like 
 gma-u.5   100785180   chlorophyll a-b binding protein CP29.2, chloroplastic 
 gma-u.5   100794604   chlorophyll a-b binding protein CP29.3, chloroplastic 
 ppo-u.5   7466067   chlorophyll a-b binding protein CP29.2, chloroplastic 
 ppo-u.5   7487313   chlorophyll a-b binding protein CP29.2, chloroplastic 
 ppo-u.5   7488015   chlorophyll a-b binding protein CP29.3, chloroplastic 
 ath-u.5   LHCB4.3   light harvesting complex photosystem II 
 ath-u.5   LHCB4.2   light harvesting complex photosystem II 
 ath-u.5   LHCB4.1   light harvesting complex photosystem II 
 vvi-u.5   100266604   chlorophyll a-b binding protein CP29.2, chloroplastic-like 
 sly-u.5   101249002   chlorophyll a-b binding protein CP29.1, chloroplastic 
 osa-u.5   4343583   chlorophyll a-b binding protein CP29.1, chloroplastic 
 zma-u.5   542478   photosystem II subunit29 
 zma-u.5   100216729   Chlorophyll a-b binding protein CP29.1 chloroplastic 

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Top 50 coexpressed genes to 11406674 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 11406674 (mtr-u.5 coexpression data)

CoexMap"11406674"


mtrLOC11406674 | Entrez gene ID : 11406674      
Species mtr gma ppo ath vvi sly osa zma hvu bna cit bra ghi sbi bdi nta tae cre sot
Paralog 4 3 3 3 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG mtr00196 [list] [network] Photosynthesis - antenna proteins (21 genes)
GO BP
GO:0009765 [list] [network] photosynthesis, light harvesting  (26 genes)  IEA  
GO CC
GO:0016020 [list] [network] membrane  (3455 genes)  IEA  
GO MF
Protein XP_003600876.3 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  plas 2,  cyto 1,  mito 1,  E.R._plas 1  (predict for XP_003600876.3)
Subcellular
localization
TargetP
chlo 6  (predict for XP_003600876.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
11406674
mtr-r.5
for
11406674
mtr-m.5
for
11406674
mtr-u.5
for
11422473
gma-u.5
for
100785415
gma-u.5
for
100785180
gma-u.5
for
100794604
ppo-u.5
for
7466067
ppo-u.5
for
7487313
ppo-u.5
for
7488015
ath-u.5
for
LHCB4.3
ath-u.5
for
LHCB4.2
ath-u.5
for
LHCB4.1
vvi-u.5
for
100266604
sly-u.5
for
101249002
osa-u.5
for
4343583
zma-u.5
for
542478
zma-u.5
for
100216729


Ortholog ID: 4362
Species mtr mtr gma gma ppo ppo ath ath bra bra vvi ghi ghi bna bna cit cit sly sot nta nta osa zma zma tae tae hvu sbi bdi cre
Symbol LOC11422473 LOC11406674 LOC100785415 LOC100785180 LOC7488015 LOC7487313 LHCB4.2 LHCB4.1 LOC103866983 LOC103870577 LOC100266604 LOC107958067 LOC107891546 LOC106399822 LOC111206508 LOC102577995 LOC102627462 LOC101249002 LOC102583949 LOC107774251 LOC107798677 LOC4343583 LOC542478 LOC100216729 LOC123188273 LOC123052387 LOC123425713 LOC8081744 LOC100834994 CHLRE_17g720250v5
Function* chlorophyll a-b binding protein CP29.1, chloroplastic chlorophyll a-b binding protein CP29.3, chloroplastic chlorophyll a-b binding protein CP29.2, chloroplastic-like chlorophyll a-b binding protein CP29.2, chloroplastic chlorophyll a-b binding protein CP29.3, chloroplastic chlorophyll a-b binding protein CP29.2, chloroplastic light harvesting complex photosystem II light harvesting complex photosystem II chlorophyll a-b binding protein CP29.3, chloroplastic chlorophyll a-b binding protein CP29.2, chloroplastic chlorophyll a-b binding protein CP29.2, chloroplastic-like chlorophyll a-b binding protein CP29.1, chloroplastic chlorophyll a-b binding protein CP29.1, chloroplastic chlorophyll a-b binding protein CP29.2, chloroplastic chlorophyll a-b binding protein CP29.2, chloroplastic-like chlorophyll a-b binding protein CP29.3, chloroplastic chlorophyll a-b binding protein CP29.1, chloroplastic chlorophyll a-b binding protein CP29.1, chloroplastic chlorophyll a-b binding protein CP29.1, chloroplastic-like chlorophyll a-b binding protein CP29.1, chloroplastic-like chlorophyll a-b binding protein CP29.2, chloroplastic chlorophyll a-b binding protein CP29.1, chloroplastic photosystem II subunit29 Chlorophyll a-b binding protein CP29.1 chloroplastic chlorophyll a-b binding protein CP29.2, chloroplastic chlorophyll a-b binding protein CP29.2, chloroplastic chlorophyll a-b binding protein CP29.2, chloroplastic-like chlorophyll a-b binding protein CP29.2, chloroplastic chlorophyll a-b binding protein CP29.2, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 9
mtr00196 Photosynthesis - antenna proteins 6
mtr00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 10
mtr00710 Carbon fixation by Calvin cycle 7
mtr00010 Glycolysis / Gluconeogenesis 4
mtr00030 Pentose phosphate pathway 4
mtr00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00196 Photosynthesis - antenna proteins 13
gma00195 Photosynthesis 3
gma00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00196 Photosynthesis - antenna proteins 9
gma00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00710 Carbon fixation by Calvin cycle 5
ppo01200 Carbon metabolism 5
ppo00195 Photosynthesis 3
ppo00010 Glycolysis / Gluconeogenesis 2
ppo00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00196 Photosynthesis - antenna proteins 7
ppo00195 Photosynthesis 4
ppo00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00196 Photosynthesis - antenna proteins 10
ath00195 Photosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00196 Photosynthesis - antenna proteins 9
ath00195 Photosynthesis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00710 Carbon fixation by Calvin cycle 6
bra01200 Carbon metabolism 6
bra00195 Photosynthesis 5
bra00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00196 Photosynthesis - antenna proteins 9
bra00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00196 Photosynthesis - antenna proteins 10
vvi00195 Photosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 10
ghi00196 Photosynthesis - antenna proteins 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00196 Photosynthesis - antenna proteins 8
ghi00195 Photosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00196 Photosynthesis - antenna proteins 10
bna00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00196 Photosynthesis - antenna proteins 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 11
cit00196 Photosynthesis - antenna proteins 6
cit00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 11
sly00196 Photosynthesis - antenna proteins 5
sly00860 Porphyrin metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 14
sot00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 14
nta00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 14
nta00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00196 Photosynthesis - antenna proteins 10
osa00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00196 Photosynthesis - antenna proteins 13
zma00195 Photosynthesis 4
zma00710 Carbon fixation by Calvin cycle 2
zma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00196 Photosynthesis - antenna proteins 11
zma00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00196 Photosynthesis - antenna proteins 10
tae00195 Photosynthesis 8
tae00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00196 Photosynthesis - antenna proteins 14
tae00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00196 Photosynthesis - antenna proteins 10
hvu00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00196 Photosynthesis - antenna proteins 12
sbi00195 Photosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00195 Photosynthesis 9
bdi00196 Photosynthesis - antenna proteins 9
bdi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00195 Photosynthesis 5
cre00196 Photosynthesis - antenna proteins 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 11422473 11406674 100785415 100785180 7488015 7487313 820043 830325 103866983 103870577 100266604 107958067 107891546 106399822 111206508 102577995 102627462 101249002 102583949 107774251 107798677 4343583 542478 100216729 123188273 123052387 123425713 8081744 100834994 5722671
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