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Orthologous genes in OrthoFinder**

Species Gene Description
 bdi-r.1   100827481   E3 ubiquitin-protein ligase COP1 
 tae-r.2   123145654   E3 ubiquitin-protein ligase COP1 
 tae-r.2   123128534   E3 ubiquitin-protein ligase COP1 
 tae-r.2   123138400   E3 ubiquitin-protein ligase COP1 
 hvu-r.1   123402650   E3 ubiquitin-protein ligase COP1 
 osa-u.5   4330868   E3 ubiquitin-protein ligase COP1 
 zma-u.5   100286122   ubiquitin ligase protein COP1 
 zma-u.5   100279342   E3 ubiquitin-protein ligase COP1 
 sbi-r.1   8078944   E3 ubiquitin-protein ligase COP1 
 ath-u.5   COP1   Transducin/WD40 repeat-like superfamily protein 
 gma-u.5   100788171   E3 ubiquitin-protein ligase COP1 
 gma-u.5   100813745   E3 ubiquitin-protein ligase COP1 
 sly-u.5   COP1   putative E3 ubiquitin-protein ligase COP1 
 sly-u.5   101249698   E3 ubiquitin-protein ligase COP1-like 
 bra-r.6   103865236   E3 ubiquitin-protein ligase COP1 
 vvi-u.5   100248310   E3 ubiquitin-protein ligase COP1 
 vvi-u.5   100246063   E3 ubiquitin-protein ligase COP1 
 ppo-u.5   7468530   E3 ubiquitin-protein ligase COP1 
 ppo-u.5   18097291   E3 ubiquitin-protein ligase COP1 
 mtr-u.5   11420758   E3 ubiquitin-protein ligase COP1 
 ghi-r.1   107924485   E3 ubiquitin-protein ligase COP1 
 ghi-r.1   107912628   E3 ubiquitin-protein ligase COP1 
 ghi-r.1   107924934   E3 ubiquitin-protein ligase COP1 
 bna-r.1   106396324   E3 ubiquitin-protein ligase COP1 
 bna-r.1   106451277   E3 ubiquitin-protein ligase COP1-like 
 bna-r.1   106427629   E3 ubiquitin-protein ligase COP1-like 
 sot-r.1   102605430   E3 ubiquitin-protein ligase COP1-like 
 sot-r.1   102592355   E3 ubiquitin-protein ligase COP1-like 
 cit-r.1   102611930   E3 ubiquitin-protein ligase COP1 
 nta-r.1   107827195   E3 ubiquitin-protein ligase COP1 
 nta-r.1   107821340   E3 ubiquitin-protein ligase COP1 
 nta-r.1   107811264   E3 ubiquitin-protein ligase COP1 

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Top 50 coexpressed genes to 100827481 (bdi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100827481 (bdi-r.1 coexpression data)

CoexMap"100827481"


bdiLOC100827481 | Entrez gene ID : 100827481      
Species bdi tae hvu osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 1 3 1 1 2 1 1 2 2 1 2 2 1 3 3 2 1 3 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bdi04120 [list] [network] Ubiquitin mediated proteolysis (156 genes)
bdi04712 [list] [network] Circadian rhythm - plant (44 genes)
GO BP
GO:0043161 [list] [network] proteasome-mediated ubiquitin-dependent protein catabolic process  (151 genes)  IEA  
GO CC
GO MF
GO:0061630 [list] [network] ubiquitin protein ligase activity  (193 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4040 genes)  IEA  
Protein XP_010236060.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_010236060.1)
Subcellular
localization
TargetP
other 5  (predict for XP_010236060.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bdi-r.1
for
100827481
tae-r.2
for
123145654
tae-r.2
for
123128534
tae-r.2
for
123138400
hvu-r.1
for
123402650
osa-u.5
for
4330868
zma-u.5
for
100286122
zma-u.5
for
100279342
sbi-r.1
for
8078944
ath-u.5
for
COP1
gma-u.5
for
100788171
gma-u.5
for
100813745
sly-u.5
for
COP1
sly-u.5
for
101249698
bra-r.6
for
103865236
vvi-u.5
for
100248310
vvi-u.5
for
100246063
ppo-u.5
for
7468530
ppo-u.5
for
18097291
mtr-u.5
for
11420758
ghi-r.1
for
107924485
ghi-r.1
for
107912628
ghi-r.1
for
107924934
bna-r.1
for
106396324
bna-r.1
for
106451277
bna-r.1
for
106427629
sot-r.1
for
102605430
sot-r.1
for
102592355
cit-r.1
for
102611930
nta-r.1
for
107827195
nta-r.1
for
107821340
nta-r.1
for
107811264


Ortholog ID: 5269
Species bdi tae tae tae hvu osa zma zma sbi ath gma gma sly sly bra vvi vvi ppo ppo mtr ghi ghi ghi bna bna bna sot sot cit nta nta nta
Symbol LOC100827481 LOC123145654 LOC123128534 LOC123138400 LOC123402650 LOC4330868 LOC100286122 LOC100279342 LOC8078944 COP1 LOC100788171 LOC100813745 COP1 LOC101249698 LOC103865236 LOC100248310 LOC100246063 LOC7468530 LOC18097291 LOC11420758 LOC107924485 LOC107912628 LOC107935346 LOC106396324 LOC106451277 LOC106427629 LOC102605430 LOC102592355 LOC102611930 LOC107821340 LOC107792543 LOC107773326
Function* E3 ubiquitin-protein ligase COP1 E3 ubiquitin-protein ligase COP1 E3 ubiquitin-protein ligase COP1 E3 ubiquitin-protein ligase COP1 E3 ubiquitin-protein ligase COP1 E3 ubiquitin-protein ligase COP1 ubiquitin ligase protein COP1 E3 ubiquitin-protein ligase COP1 E3 ubiquitin-protein ligase COP1 Transducin/WD40 repeat-like superfamily protein E3 ubiquitin-protein ligase COP1 E3 ubiquitin-protein ligase COP1 putative E3 ubiquitin-protein ligase COP1 E3 ubiquitin-protein ligase COP1-like E3 ubiquitin-protein ligase COP1 E3 ubiquitin-protein ligase COP1 E3 ubiquitin-protein ligase COP1 E3 ubiquitin-protein ligase COP1 E3 ubiquitin-protein ligase COP1 E3 ubiquitin-protein ligase COP1 E3 ubiquitin-protein ligase COP1 E3 ubiquitin-protein ligase COP1 E3 ubiquitin-protein ligase COP1 E3 ubiquitin-protein ligase COP1 E3 ubiquitin-protein ligase COP1-like E3 ubiquitin-protein ligase COP1-like E3 ubiquitin-protein ligase COP1-like E3 ubiquitin-protein ligase COP1-like E3 ubiquitin-protein ligase COP1 E3 ubiquitin-protein ligase COP1 E3 ubiquitin-protein ligase COP1 E3 ubiquitin-protein ligase COP1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 4
tae04712 Circadian rhythm - plant 4
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 4
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 7
tae04120 Ubiquitin mediated proteolysis 3
tae00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01240 Biosynthesis of cofactors 3
zma00051 Fructose and mannose metabolism 2
zma00520 Amino sugar and nucleotide sugar metabolism 2
zma00541 Biosynthesis of various nucleotide sugars 2
zma01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00900 Terpenoid backbone biosynthesis 2
zma04120 Ubiquitin mediated proteolysis 2
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00860 Porphyrin metabolism 2
gma04120 Ubiquitin mediated proteolysis 2
gma04712 Circadian rhythm - plant 2
gma00620 Pyruvate metabolism 2
gma00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 2
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 2
sly04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00999 Biosynthesis of various plant secondary metabolites 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00561 Glycerolipid metabolism 2
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 2
ghi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 2
ghi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00940 Phenylpropanoid biosynthesis 5
ghi00941 Flavonoid biosynthesis 5
ghi00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 5
ghi04120 Ubiquitin mediated proteolysis 2
ghi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 6
bna00440 Phosphonate and phosphinate metabolism 2
bna00564 Glycerophospholipid metabolism 2
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 6
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 6
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
sot04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00190 Oxidative phosphorylation 2
cit00195 Photosynthesis 2
cit04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00670 One carbon pool by folate 4
nta00260 Glycine, serine and threonine metabolism 2
nta00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00904 Diterpenoid biosynthesis 2
nta04120 Ubiquitin mediated proteolysis 2
nta04712 Circadian rhythm - plant 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100827481 123145654 123128534 123138400 123402650 4330868 100286122 100279342 8078944 817857 100788171 100813745 543547 101249698 103865236 100248310 100246063 7468530 18097291 11420758 107924485 107912628 107935346 106396324 106451277 106427629 102605430 102592355 102611930 107821340 107792543 107773326
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