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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   COP1   putative E3 ubiquitin-protein ligase COP1 
 sly-r.6   COP1   putative E3 ubiquitin-protein ligase COP1 
 sly-m.5   COP1   putative E3 ubiquitin-protein ligase COP1 
 sly-u.5   101249698   E3 ubiquitin-protein ligase COP1-like 
 ath-u.5   COP1   Transducin/WD40 repeat-like superfamily protein 
 gma-u.5   100813745   E3 ubiquitin-protein ligase COP1 
 gma-u.5   100788171   E3 ubiquitin-protein ligase COP1 
 vvi-u.5   100248310   E3 ubiquitin-protein ligase COP1 
 vvi-u.5   100246063   E3 ubiquitin-protein ligase COP1 
 ppo-u.5   7468530   E3 ubiquitin-protein ligase COP1 
 ppo-u.5   18097291   E3 ubiquitin-protein ligase COP1 
 mtr-u.5   11420758   E3 ubiquitin-protein ligase COP1 
 osa-u.5   4330868   E3 ubiquitin-protein ligase COP1 
 zma-u.5   100286122   ubiquitin ligase protein COP1 
 zma-u.5   100279342   E3 ubiquitin-protein ligase COP1 

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Top 50 coexpressed genes to COP1 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to COP1 (sly-u.5 coexpression data)

CoexMap"543547"


slyCOP1 | Entrez gene ID : 543547      
Species sly ath gma vvi ppo mtr osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 1 2 2 2 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly04120 [list] [network] Ubiquitin mediated proteolysis (151 genes)
sly04712 [list] [network] Circadian rhythm - plant (47 genes)
GO BP
GO:0043161 [list] [network] proteasome-mediated ubiquitin-dependent protein catabolic process  (132 genes)  IEA  
GO CC
GO MF
GO:0061630 [list] [network] ubiquitin protein ligase activity  (194 genes)  IEA  
GO:0005515 [list] [network] protein binding  (3982 genes)  IEA  
Protein NP_001234047.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for NP_001234047.2)
Subcellular
localization
TargetP
other 8  (predict for NP_001234047.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
COP1

.
sly-r.6
for
COP1

.
sly-m.5
for
COP1

.
sly-u.5
for
101249698

.
ath-u.5
for
COP1

.
gma-u.5
for
100813745

.
gma-u.5
for
100788171

.
vvi-u.5
for
100248310

.
vvi-u.5
for
100246063

.
ppo-u.5
for
7468530

.
ppo-u.5
for
18097291

.
mtr-u.5
for
11420758

.
osa-u.5
for
4330868

.
zma-u.5
for
100286122

.
zma-u.5
for
100279342

.


Ortholog ID: 5269
Species ath gma gma sly sly osa zma zma bra vvi vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot sot cit bdi nta nta
Symbol COP1 LOC100813745 LOC100788171 COP1 LOC101249698 LOC4330868 LOC100279342 LOC100286122 LOC103865236 LOC100246063 LOC100248310 LOC18097291 LOC11420758 LOC123138400 LOC123145654 LOC123402650 LOC107924485 LOC107935346 LOC106451277 LOC106396324 LOC8078944 LOC102592355 LOC102605430 LOC102611930 LOC100827481 LOC107821340 LOC107773326
Function* Transducin/WD40 repeat-like superfamily protein E3 ubiquitin-protein ligase COP1 E3 ubiquitin-protein ligase COP1 putative E3 ubiquitin-protein ligase COP1 E3 ubiquitin-protein ligase COP1-like E3 ubiquitin-protein ligase COP1 E3 ubiquitin-protein ligase COP1 ubiquitin ligase protein COP1 E3 ubiquitin-protein ligase COP1 E3 ubiquitin-protein ligase COP1 E3 ubiquitin-protein ligase COP1 E3 ubiquitin-protein ligase COP1 E3 ubiquitin-protein ligase COP1 E3 ubiquitin-protein ligase COP1 E3 ubiquitin-protein ligase COP1 E3 ubiquitin-protein ligase COP1 E3 ubiquitin-protein ligase COP1 E3 ubiquitin-protein ligase COP1 E3 ubiquitin-protein ligase COP1-like E3 ubiquitin-protein ligase COP1 E3 ubiquitin-protein ligase COP1 E3 ubiquitin-protein ligase COP1-like E3 ubiquitin-protein ligase COP1-like E3 ubiquitin-protein ligase COP1 E3 ubiquitin-protein ligase COP1 E3 ubiquitin-protein ligase COP1 E3 ubiquitin-protein ligase COP1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 2
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00860 Porphyrin metabolism 2
gma04120 Ubiquitin mediated proteolysis 2
gma04712 Circadian rhythm - plant 2
gma00620 Pyruvate metabolism 2
gma00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 2
sly04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00999 Biosynthesis of various plant secondary metabolites 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00900 Terpenoid backbone biosynthesis 2
zma04120 Ubiquitin mediated proteolysis 2
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01240 Biosynthesis of cofactors 3
zma00051 Fructose and mannose metabolism 2
zma00520 Amino sugar and nucleotide sugar metabolism 2
zma00541 Biosynthesis of various nucleotide sugars 2
zma01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00561 Glycerolipid metabolism 2
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 7
tae04120 Ubiquitin mediated proteolysis 3
tae00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 4
tae04712 Circadian rhythm - plant 4
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 2
ghi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00940 Phenylpropanoid biosynthesis 5
ghi00941 Flavonoid biosynthesis 5
ghi00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 5
ghi04120 Ubiquitin mediated proteolysis 2
ghi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 6
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 6
bna00440 Phosphonate and phosphinate metabolism 2
bna00564 Glycerophospholipid metabolism 2
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
sot04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00190 Oxidative phosphorylation 2
cit00195 Photosynthesis 2
cit04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00904 Diterpenoid biosynthesis 2
nta04120 Ubiquitin mediated proteolysis 2
nta04712 Circadian rhythm - plant 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 817857 100813745 100788171 543547 101249698 4330868 100279342 100286122 103865236 100246063 100248310 18097291 11420758 123138400 123145654 123402650 107924485 107935346 106451277 106396324 8078944 102592355 102605430 102611930 100827481 107821340 107773326
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