ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bdi-r.1	100830516	protein argonaute 1A
bdi-r.1	104583795	uncharacterized LOC104583795
bdi-r.1	100839655	protein argonaute PNH1
bdi-r.1	100829954	protein argonaute MEL1
tae-r.2	123123257	protein argonaute MEL1
tae-r.2	123046293	protein argonaute 1B
hvu-r.1	123427487	protein argonaute 1B
osa-u.5	9269490	protein argonaute PNH1-like
osa-u.5	4333733	protein argonaute 11-like
zma-u.5	103626484	protein argonaute 1D
zma-u.5	100193970	uncharacterized LOC100193970
zma-u.5	100304327	argonaute1c
sbi-r.1	8056608	protein argonaute 1B
ath-u.5	AGO5	Argonaute family protein
ath-u.5	AGO10	Stabilizer of iron transporter SufD / Polynucleotidyl transferase
ath-u.5	AGO1	Stabilizer of iron transporter SufD / Polynucleotidyl transferase
gma-u.5	100819073	protein argonaute 10
gma-u.5	100816999	protein argonaute 10
gma-u.5	100813485	protein argonaute PNH1
sly-u.5	AGO10	protein argonaute 10
sly-u.5	101259671	protein argonaute 10
sly-u.5	AGO1B	Argonaute1B
bra-r.6	103829691	protein argonaute 5
bra-r.6	103833004	protein argonaute 1
bra-r.6	103868679	protein argonaute 1
vvi-u.5	100256320	protein argonaute 1
vvi-u.5	100268067	protein argonaute PNH1
vvi-u.5	100258447	protein argonaute 5
ppo-u.5	7498053	protein argonaute 10
ppo-u.5	7463340	protein argonaute 5
ppo-u.5	7467512	protein argonaute 10
mtr-u.5	11409042	protein argonaute PNH1
mtr-u.5	25482951	protein argonaute 10
ghi-r.1	121224458	protein argonaute 1
ghi-r.1	121220847	protein argonaute 5
ghi-r.1	107952160	protein argonaute 10
bna-r.1	106427533	protein argonaute 10
bna-r.1	106396342	protein argonaute 5
bna-r.1	106376392	protein argonaute 1
sot-r.1	102595869	protein argonaute 1
sot-r.1	102594078	protein argonaute 10-like
sot-r.1	102582607	protein argonaute 1-like
cit-r.1	102628378	protein argonaute 10
cit-r.1	102630366	protein argonaute 5
nta-r.1	107824892	protein argonaute 5
nta-r.1	107806342	protein argonaute 1
nta-r.1	107801972	protein argonaute 10
cre-r.1	CHLRE_16g689647v5	uncharacterized protein

Top 50 coexpressed genes to 100830516 (bdi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100830516 (bdi-r.1 coexpression data)

CoexMap"100830516"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0035194 [list] [network] regulatory ncRNA-mediated post-transcriptional gene silencing

(17 genes)

IEA

GO CC

GO:0005737 [list] [network] cytoplasm

(4615 genes)

IEA

GO MF

GO:0003723 [list] [network] RNA binding	(1239 genes)	IEA
GO:0005515 [list] [network] protein binding	(4040 genes)	IEA

Protein

XP_003570049.2 [sequence] [blastp]
XP_014756491.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 5, cyto 4, vacu 1, pero 1	(predict for XP_003570049.2)
nucl 4, cyto 3, pero 1, cyto_E.R. 1, cyto_plas 1	(predict for XP_014756491.1)

Subcellular
localization
TargetP

other 7	(predict for XP_003570049.2)
chlo 6, other 4	(predict for XP_014756491.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bdi-r.1 for 100830516	bdi-r.1 for 104583795	bdi-r.1 for 100839655	bdi-r.1 for 100829954	tae-r.2 for 123123257	tae-r.2 for 123046293	hvu-r.1 for 123427487	osa-u.5 for 9269490	osa-u.5 for 4333733	zma-u.5 for 103626484	zma-u.5 for 100193970	zma-u.5 for 100304327	sbi-r.1 for 8056608	ath-u.5 for AGO5	ath-u.5 for AGO10	ath-u.5 for AGO1	gma-u.5 for 100819073	gma-u.5 for 100816999	gma-u.5 for 100813485	sly-u.5 for AGO10	sly-u.5 for 101259671	sly-u.5 for AGO1B	bra-r.6 for 103829691	bra-r.6 for 103833004	bra-r.6 for 103868679	vvi-u.5 for 100256320	vvi-u.5 for 100268067	vvi-u.5 for 100258447	ppo-u.5 for 7498053	ppo-u.5 for 7463340	ppo-u.5 for 7467512	mtr-u.5 for 11409042	mtr-u.5 for 25482951	ghi-r.1 for 121224458	ghi-r.1 for 121220847	ghi-r.1 for 107952160	bna-r.1 for 106427533	bna-r.1 for 106396342	bna-r.1 for 106376392	sot-r.1 for 102595869	sot-r.1 for 102594078	sot-r.1 for 102582607	cit-r.1 for 102628378	cit-r.1 for 102630366	nta-r.1 for 107824892	nta-r.1 for 107806342	nta-r.1 for 107801972	cre-r.1 for CHLRE_16g689647v5

Ortholog

Ortholog ID: 261

Species

bdi

tae

hvu

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

AGO5

AGO10

AGO1

AGO5

AGO5

Function^*

protein argonaute 1A

protein argonaute MEL1

protein argonaute 1B

protein argonaute MEL1

protein argonaute 1D

protein argonaute PNH1

protein argonaute 13-like

protein argonaute 1A-like

uncharacterized LOC100384259

uncharacterized LOC100384364

protein argonaute MEL1

protein argonaute 1B

Argonaute family protein

Stabilizer of iron transporter SufD / Polynucleotidyl transferase

protein argonaute PNH1

argonaute 5

argonaute 1

protein argonaute 10

protein argonaute 1A-like

Argonaute 5

protein argonaute 5

protein argonaute 1

protein argonaute PNH1

protein argonaute 10

protein argonaute 1

protein argonaute 1-like

protein argonaute 5

protein argonaute 10

protein argonaute 1

protein argonaute 10

protein argonaute 5-like

protein argonaute 1

protein argonaute 10-like

protein argonaute 1-like

protein argonaute MEL1-like

protein argonaute 5-like

protein argonaute 1

protein argonaute 10

protein argonaute PNH1-like

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03082	ATP-dependent chromatin remodeling	2
bdi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03030	DNA replication	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03013	Nucleocytoplasmic transport	3
sbi04120	Ubiquitin mediated proteolysis	3
sbi03015	mRNA surveillance pathway	2
sbi04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	3
sbi03015	mRNA surveillance pathway	3
sbi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03015	mRNA surveillance pathway	2
ath03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	4
ath03013	Nucleocytoplasmic transport	3
ath03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2
gma04141	Protein processing in endoplasmic reticulum	2
gma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03082	ATP-dependent chromatin remodeling	2
bra04136	Autophagy - other	2
bra04518	Integrin signaling	2
bra04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03013	Nucleocytoplasmic transport	4
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	3
ppo04142	Lysosome	2
ppo05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	3
mtr00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00904	Diterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00904	Diterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00760	Nicotinate and nicotinamide metabolism	2
cit01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	4
nta04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00430	Taurine and hypotaurine metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

100830516

100829954

100826932

123113746

123149841

123413304

4334374

4330281

100384259

100384364

103625809

8056608

8065288

817334

834403

841262

100808457

100799033

100778754

101259671

101247032

101244672

103829691

103833004

103868679

100256320

100268067

100244311

7498053

7454033

18105620

25492353

25485122

25497351

121224458

107952160

107929142

106427533

106352557

111215636

102595869

102594078

102582607

102630160

102630678

102616587

107806342

107801972

107829827

5724406

The preparation time of this page was 0.1 [sec].


Species	bdi	tae	hvu	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	4	2	1	2	3	1	3	3	3	3	3	3	2	3	3	3	2	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100830516 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100830516 (bdi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**