ATTED-II : GeneCoexpression result

Species	Gene	Description
bdi-r.1	100835048	elongin-C
tae-r.2	123096731	elongin-C
tae-r.2	123091747	elongin-C
tae-r.2	123086309	elongin-C
hvu-r.1	123448237	elongin-C
osa-u.5	4351227	uncharacterized LOC4351227
zma-u.5	100282398	uncharacterized LOC100282398
zma-u.5	100283809	uncharacterized LOC100283809
sbi-r.1	8061498	elongin-C
ath-u.5	AT5G59140	BTB/POZ domain-containing protein
gma-u.5	100500097	uncharacterized LOC100500097
gma-u.5	100305702	uncharacterized LOC100305702
sly-u.5	101267899	uncharacterized LOC101267899
bra-r.6	103856649	elongin-C
bra-r.6	103845345	elongin-C
vvi-u.5	100258618	uncharacterized LOC100258618
ppo-u.5	7468608	uncharacterized LOC7468608
mtr-u.5	25492546	elongin-C
ghi-r.1	107886021	elongin-C
ghi-r.1	107943614	elongin-C
ghi-r.1	107935050	elongin-C
bna-r.1	106387125	elongin-C
bna-r.1	106433293	elongin-C
bna-r.1	106420378	elongin-C
sot-r.1	102603521	transcription elongation factor B polypeptide 1
cit-r.1	102614386	uncharacterized LOC102614386
nta-r.1	107789763	uncharacterized LOC107789763
nta-r.1	107829727	uncharacterized LOC107829727
cre-r.1	CHLRE_01g061442v5	uncharacterized protein

Annotation

functional annotation

KEGG

bdi04120 [list] [network] Ubiquitin mediated proteolysis (156 genes)

GO BP

GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process

(273 genes)

IEA

GO CC

GO:0070449 [list] [network] elongin complex

(2 genes)

IEA

GO MF

GO:0030674 [list] [network] protein-macromolecule adaptor activity

(178 genes)

IEA

Protein

XP_003577192.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, mito 4, nucl 1

(predict for XP_003577192.1)

Subcellular
localization
TargetP

other 8

(predict for XP_003577192.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bdi-r.1 for 100835048	tae-r.2 for 123096731	tae-r.2 for 123091747	tae-r.2 for 123086309	hvu-r.1 for 123448237	osa-u.5 for 4351227	zma-u.5 for 100282398	zma-u.5 for 100283809	sbi-r.1 for 8061498	ath-u.5 for AT5G59140	gma-u.5 for 100500097	gma-u.5 for 100305702	sly-u.5 for 101267899	bra-r.6 for 103856649	bra-r.6 for 103845345	vvi-u.5 for 100258618	ppo-u.5 for 7468608	mtr-u.5 for 25492546	ghi-r.1 for 107886021	ghi-r.1 for 107943614	ghi-r.1 for 107935050	bna-r.1 for 106387125	bna-r.1 for 106433293	bna-r.1 for 106420378	sot-r.1 for 102603521	cit-r.1 for 102614386	nta-r.1 for 107789763	nta-r.1 for 107829727	cre-r.1 for CHLRE_01g061442v5

Ortholog

Ortholog ID: 7769

Species

bdi

tae

hvu

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

elongin-C

uncharacterized LOC4351227

uncharacterized LOC100282398

uncharacterized LOC100283809

elongin-C

BTB/POZ domain-containing protein

uncharacterized LOC100500097

uncharacterized LOC100305702

uncharacterized LOC101267899

elongin-C

uncharacterized LOC100258618

uncharacterized LOC7468608

elongin-C

transcription elongation factor B polypeptide 1

uncharacterized LOC102614386

uncharacterized LOC107789763

uncharacterized LOC107829727

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	4
tae03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	6
tae03008	Ribosome biogenesis in eukaryotes	2
tae03083	Polycomb repressive complex	2
tae04712	Circadian rhythm - plant	2
tae03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00190	Oxidative phosphorylation	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03060	Protein export	3
zma04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	3
sbi03040	Spliceosome	2
sbi03050	Proteasome	2
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04120	Ubiquitin mediated proteolysis	3
sly03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	2
bra00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03050	Proteasome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2
ppo04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	4
ghi03022	Basal transcription factors	2
ghi00061	Fatty acid biosynthesis	2
ghi00071	Fatty acid degradation	2
ghi01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	4
ghi00190	Oxidative phosphorylation	3
ghi03022	Basal transcription factors	2
ghi04141	Protein processing in endoplasmic reticulum	2
ghi03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	4
ghi03022	Basal transcription factors	2
ghi04141	Protein processing in endoplasmic reticulum	2
ghi03410	Base excision repair	2
ghi00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03050	Proteasome	6
bna04120	Ubiquitin mediated proteolysis	4
bna04122	Sulfur relay system	2
bna03013	Nucleocytoplasmic transport	2
bna03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	10
bna04141	Protein processing in endoplasmic reticulum	6
bna04122	Sulfur relay system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	8
bna03050	Proteasome	5
bna04141	Protein processing in endoplasmic reticulum	4
bna04122	Sulfur relay system	2
bna03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04136	Autophagy - other	4
nta04148	Efferocytosis	3
nta00100	Steroid biosynthesis	2
nta04142	Lysosome	2
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04136	Autophagy - other	4
nta00100	Steroid biosynthesis	2
nta04142	Lysosome	2
nta04148	Efferocytosis	2
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04120	Ubiquitin mediated proteolysis	4

Expression

Expression pattern

Entrez Gene ID^*

100835048

123096731

123091747

123086309

123448237

4351227

100282398

100283809

8061498

836032

100500097

100305702

101267899

103856649

103845345

100258618

7468608

25492546

107886021

107943614

107935050

106387125

106433293

106420378

102603521

102614386

107789763

107829727

5725744

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100835048 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100835048 (bdi-r.1 coexpression data)


Species	bdi	tae	hvu	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	1	3	1	1	2	1	1	2	1	2	1	1	1	3	3	1	1	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100835048 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100835048 (bdi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**