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Orthologous genes in OrthoFinder**

Species Gene Description
 bdi-r.1   100839628   DNA-directed RNA polymerases II, IV and V subunit 11 
 bdi-r.1   100828839   DNA-directed RNA polymerases II, IV and V subunit 11 
 tae-r.2   123114249   DNA-directed RNA polymerases II, IV and V subunit 11 
 tae-r.2   123121940   DNA-directed RNA polymerases II, IV and V subunit 11 
 hvu-r.1   123426559   DNA-directed RNA polymerases II, IV and V subunit 11-like 
 hvu-r.1   123399444   DNA-directed RNA polymerases II, IV and V subunit 11-like 
 osa-u.5   4342517   DNA-directed RNA polymerases II, IV and V subunit 11 
 zma-u.5   103627418   DNA-directed RNA polymerases II, IV and V subunit 11 
 sbi-r.1   8054480   DNA-directed RNA polymerases II, IV and V subunit 11 
 sbi-r.1   8080291   DNA-directed RNA polymerases II, IV and V subunit 11 
 ath-u.5   NRPB11   DNA-directed RNA polymerase, RBP11-like protein 
 gma-u.5   100784219   DNA-directed RNA polymerase II subunit RPB11-like 
 gma-u.5   100527865   DNA-directed RNA polymerases II, IV and V subunit 11 
 sly-u.5   101244156   DNA-directed RNA polymerases II, IV and V subunit 11 
 bra-r.6   103841143   DNA-directed RNA polymerases II, IV and V subunit 11 
 bra-r.6   103863497   DNA-directed RNA polymerases II, IV and V subunit 11 
 vvi-u.5   100259467   DNA-directed RNA polymerases II, IV and V subunit 11 
 ppo-u.5   7475018   DNA-directed RNA polymerases II, IV and V subunit 11 
 mtr-u.5   25491968   DNA-directed RNA polymerases II, IV and V subunit 11 
 ghi-r.1   107960061   DNA-directed RNA polymerases II, IV and V subunit 11 
 ghi-r.1   107890391   DNA-directed RNA polymerases II, IV and V subunit 11 
 ghi-r.1   107915795   DNA-directed RNA polymerases II, IV and V subunit 11 
 bna-r.1   106367853   DNA-directed RNA polymerases II, IV and V subunit 11 
 bna-r.1   106390724   DNA-directed RNA polymerases II, IV and V subunit 11-like 
 bna-r.1   106424969   DNA-directed RNA polymerases II, IV and V subunit 11 
 sot-r.1   102581010   DNA-directed RNA polymerases II, IV and V subunit 11 
 cit-r.1   102612486   DNA-directed RNA polymerases II, IV and V subunit 11 
 nta-r.1   107770430   DNA-directed RNA polymerases II, IV and V subunit 11 
 nta-r.1   107792672   DNA-directed RNA polymerases II, IV and V subunit 11-like 
 nta-r.1   107801458   DNA-directed RNA polymerases II, IV and V subunit 11-like 
 cre-r.1   CHLRE_13g565550v5   uncharacterized protein 

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Top 50 coexpressed genes to 100839628 (bdi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100839628 (bdi-r.1 coexpression data)

CoexMap"100839628"


bdiLOC100839628 | Entrez gene ID : 100839628      
Species bdi tae hvu osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 2 2 2 1 1 2 1 2 1 2 1 1 1 3 3 1 1 3 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bdi03020 [list] [network] RNA polymerase (60 genes)
bdi03420 [list] [network] Nucleotide excision repair (85 genes)
GO BP
GO:0006366 [list] [network] transcription by RNA polymerase II  (71 genes)  IEA  
GO CC
GO:0005665 [list] [network] RNA polymerase II, core complex  (29 genes)  IEA  
GO MF
GO:0046983 [list] [network] protein dimerization activity  (396 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (1744 genes)  IEA  
Protein XP_010228245.1 [sequence] [blastp]
XP_014753605.1 [sequence] [blastp]
XP_014753608.1 [sequence] [blastp]
XP_024313419.1 [sequence] [blastp]
XP_024313420.1 [sequence] [blastp]
XP_024313421.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 4,  plas 1,  extr 1,  pero 1  (predict for XP_010228245.1)
nucl 4,  cyto 4,  plas 1,  extr 1,  pero 1  (predict for XP_014753605.1)
nucl 4,  cyto 4,  plas 1,  extr 1,  pero 1  (predict for XP_014753608.1)
nucl 4,  cyto 4,  plas 1,  extr 1,  pero 1  (predict for XP_024313419.1)
nucl 4,  cyto 4,  plas 1,  extr 1,  pero 1  (predict for XP_024313420.1)
nucl 4,  cyto 4,  plas 1,  extr 1,  pero 1  (predict for XP_024313421.1)
Subcellular
localization
TargetP
other 8  (predict for XP_010228245.1)
other 8  (predict for XP_014753605.1)
other 8  (predict for XP_014753608.1)
other 8  (predict for XP_024313419.1)
other 8  (predict for XP_024313420.1)
other 8  (predict for XP_024313421.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bdi-r.1
for
100839628
bdi-r.1
for
100828839
tae-r.2
for
123114249
tae-r.2
for
123121940
hvu-r.1
for
123426559
hvu-r.1
for
123399444
osa-u.5
for
4342517
zma-u.5
for
103627418
sbi-r.1
for
8054480
sbi-r.1
for
8080291
ath-u.5
for
NRPB11
gma-u.5
for
100784219
gma-u.5
for
100527865
sly-u.5
for
101244156
bra-r.6
for
103841143
bra-r.6
for
103863497
vvi-u.5
for
100259467
ppo-u.5
for
7475018
mtr-u.5
for
25491968
ghi-r.1
for
107960061
ghi-r.1
for
107890391
ghi-r.1
for
107915795
bna-r.1
for
106367853
bna-r.1
for
106390724
bna-r.1
for
106424969
sot-r.1
for
102581010
cit-r.1
for
102612486
nta-r.1
for
107770430
nta-r.1
for
107792672
nta-r.1
for
107801458
cre-r.1
for
CHLRE_13g565550v5


Ortholog ID: 3817
Species bdi bdi tae tae tae hvu hvu osa zma sbi sbi ath gma gma sly bra bra vvi ppo mtr ghi ghi ghi bna bna bna sot cit nta nta nta cre
Symbol LOC100839628 LOC100828839 LOC123114249 LOC123121940 LOC123104182 LOC123426559 LOC123399444 LOC4342517 LOC100274213 LOC8054480 LOC8080291 NRPB11 LOC100784219 LOC100527865 LOC101244156 LOC103841143 LOC103863497 LOC100259467 LOC7475018 LOC25491968 LOC107890391 LOC107915795 LOC107950661 LOC106367853 LOC106424969 LOC106445664 LOC102581010 LOC102612486 LOC107770430 LOC107792672 LOC107801458 CHLRE_13g565550v5
Function* DNA-directed RNA polymerases II, IV and V subunit 11 DNA-directed RNA polymerases II, IV and V subunit 11 DNA-directed RNA polymerases II, IV and V subunit 11 DNA-directed RNA polymerases II, IV and V subunit 11 DNA-directed RNA polymerases II, IV and V subunit 11 DNA-directed RNA polymerases II, IV and V subunit 11-like DNA-directed RNA polymerases II, IV and V subunit 11-like DNA-directed RNA polymerases II, IV and V subunit 11 DNA-directed RNA polymerase II subunit J DNA-directed RNA polymerases II, IV and V subunit 11 DNA-directed RNA polymerases II, IV and V subunit 11 DNA-directed RNA polymerase, RBP11-like protein DNA-directed RNA polymerase II subunit RPB11-like DNA-directed RNA polymerases II, IV and V subunit 11 DNA-directed RNA polymerases II, IV and V subunit 11 DNA-directed RNA polymerases II, IV and V subunit 11 DNA-directed RNA polymerases II, IV and V subunit 11 DNA-directed RNA polymerases II, IV and V subunit 11 DNA-directed RNA polymerases II, IV and V subunit 11 DNA-directed RNA polymerases II, IV and V subunit 11 DNA-directed RNA polymerases II, IV and V subunit 11 DNA-directed RNA polymerases II, IV and V subunit 11 DNA-directed RNA polymerases II, IV and V subunit 11 DNA-directed RNA polymerases II, IV and V subunit 11 DNA-directed RNA polymerases II, IV and V subunit 11 DNA-directed RNA polymerases II, IV and V subunit 11-like DNA-directed RNA polymerases II, IV and V subunit 11 DNA-directed RNA polymerases II, IV and V subunit 11 DNA-directed RNA polymerases II, IV and V subunit 11 DNA-directed RNA polymerases II, IV and V subunit 11-like DNA-directed RNA polymerases II, IV and V subunit 11-like uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 9
bdi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 9
tae03420 Nucleotide excision repair 9
tae03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 9
tae03020 RNA polymerase 4
tae03420 Nucleotide excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 5
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 5
zma03020 RNA polymerase 3
zma03420 Nucleotide excision repair 3
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 3
sbi04146 Peroxisome 3
sbi00053 Ascorbate and aldarate metabolism 2
sbi00480 Glutathione metabolism 2
sbi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 4
ath00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 2
gma03040 Spliceosome 2
gma00510 N-Glycan biosynthesis 2
gma00513 Various types of N-glycan biosynthesis 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 4
gma03040 Spliceosome 3
gma03008 Ribosome biogenesis in eukaryotes 3
gma04016 MAPK signaling pathway - plant 2
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00190 Oxidative phosphorylation 4
sly04120 Ubiquitin mediated proteolysis 2
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
vvi03020 RNA polymerase 2
vvi03420 Nucleotide excision repair 2
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04136 Autophagy - other 3
ppo03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 13
mtr03020 RNA polymerase 2
mtr03420 Nucleotide excision repair 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 7
ghi03250 Viral life cycle - HIV-1 2
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 11
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 11
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 4
bna03420 Nucleotide excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 4
bna03420 Nucleotide excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 4
bna03420 Nucleotide excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 9
sot00190 Oxidative phosphorylation 3
sot00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 5
cit03018 RNA degradation 3
cit03420 Nucleotide excision repair 2
cit03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 4
nta03420 Nucleotide excision repair 4
nta03050 Proteasome 3
nta00190 Oxidative phosphorylation 3
nta00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 4
nta03420 Nucleotide excision repair 4
nta03050 Proteasome 3
nta00190 Oxidative phosphorylation 3
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta03020 RNA polymerase 4
nta03420 Nucleotide excision repair 4
nta03018 RNA degradation 2
nta00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04120 Ubiquitin mediated proteolysis 4
cre03420 Nucleotide excision repair 3
cre04141 Protein processing in endoplasmic reticulum 3
cre03020 RNA polymerase 2
cre03083 Polycomb repressive complex 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100839628 100828839 123114249 123121940 123104182 123426559 123399444 4342517 100274213 8054480 8080291 824372 100784219 100527865 101244156 103841143 103863497 100259467 7475018 25491968 107890391 107915795 107950661 106367853 106424969 106445664 102581010 102612486 107770430 107792672 107801458 5719044
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